Difference between revisions of "PWY-6163"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PALMITOYL-COA-HYDROLASE-RXN PALMITOYL-COA-HYDROLASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec numb...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PALMITOYL-COA-HYDROLASE-RXN PALMITOYL-COA-HYDROLASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://enzyme.expasy.org/EC/3.1.2.2 EC-3.1.2.2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-287987 TAX-287987]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5204 TAX-5204]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4762 TAX-4762]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4890 TAX-4890]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5794 TAX-5794]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
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** chorismate biosynthesis from 3-dehydroquinate
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''6''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[PALMITYL-COA]][c] '''=>''' 1 [[PALMITATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
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* [[2.5.1.19-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 H2O[c] '''+''' 1 palmitoyl-CoA[c] '''=>''' 1 palmitate[c] '''+''' 1 coenzyme A[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_5753]]
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*** [[Tiso_gene_5752]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_801]]
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[orthology-creinhardtii]]
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== Pathways  ==
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*** [[manual-primary_network]]
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* [[PWY-321]], cutin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-321 PWY-321]
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* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
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** '''3''' reactions found over '''16''' reactions in the full pathway
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** 5 associated gene(s):
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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*** [[Tiso_gene_14718]]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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*** [[Tiso_gene_5752]]
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* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733]
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*** [[Tiso_gene_5753]]
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** '''8''' reactions found over '''18''' reactions in the full pathway
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*** [[Tiso_gene_5619]]
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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*** [[Tiso_gene_8720]]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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** 4 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[orthology-athaliana]]
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* Category: [[orthology]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** [[manual-primary_network]]
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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* Category: [[annotation]]
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* [[CHORISMATE-SYNTHASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_9630]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN-7968]]
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** 2 associated gene(s):
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*** [[Tiso_gene_5752]]
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*** [[Tiso_gene_5753]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[SHIKIMATE-5-DEHYDROGENASE-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_5752]]
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*** [[Tiso_gene_5753]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[SHIKIMATE-KINASE-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_12435]]
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*** [[Tiso_gene_3974]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16645 16645]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6163 PWY-6163]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01274 R01274]
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{{#set: taxonomic range=TAX-3041}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2763}}
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** [http://www.uniprot.org/uniprot/Q64559 Q64559]
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{{#set: taxonomic range=TAX-287987}}
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** [http://www.uniprot.org/uniprot/O14734 O14734]
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{{#set: taxonomic range=TAX-5204}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2836}}
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{{#set: ec number=EC-3.1.2.2}}
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{{#set: taxonomic range=TAX-4762}}
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{{#set: gene associated=Tiso_gene_801}}
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{{#set: taxonomic range=TAX-4890}}
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{{#set: in pathway=PWY-321|PWY-5994|PWY-6733|PWY-1121}}
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{{#set: taxonomic range=TAX-5794}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=chorismate biosynthesis from 3-dehydroquinate}}
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{{#set: reaction found=6}}
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{{#set: total reaction=6}}
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{{#set: completion rate=100.0}}

Latest revision as of 20:39, 21 March 2018

Pathway PWY-6163

Reaction(s) found

6 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links








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