Difference between revisions of "PWY-6558"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7659 RXN-7659] == * direction: ** REVERSIBLE * common name: ** geranylgeranyl_diphosphate_reduc...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7659 RXN-7659] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
* common name:
 
* common name:
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** geranylgeranyl_diphosphate_reductase
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** heparan sulfate biosynthesis (late stages)
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''13''' reactions in the full pathway
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** 1 [[CPD-7003]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[CPD-7002]][c]
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* [[2.4.1.223-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 tetrahydrogeranylgeranyl diphosphate[c] '''+''' 1 NADP+[c] '''<=>''' 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 dihydrogeranylgeranyl diphosphate[c]
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*** [[Tiso_gene_4321]]
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*** [[Tiso_gene_10445]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_8143]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_2613]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[2.4.1.224-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 2 associated gene(s):
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_6495]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_6496]]
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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* [[PWY-5063]], phytyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5063 PWY-5063]
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*** [[annotation-in-silico_annotation]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[2.4.1.225-RXN]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* Category: [[annotation]]
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*** [[Tiso_gene_6495]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.23-RXN 2.8.2.23-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.29-RXN 2.8.2.29-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.30-RXN 2.8.2.30-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=5.1.3.17-RXN 5.1.3.17-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=HEPARITIN-SULFOTRANSFERASE-RXN HEPARITIN-SULFOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11557 RXN-11557]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11558 RXN-11558]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11562 RXN-11562]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11563 RXN-11563]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16327 RXN-16327]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33208}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08755 R08755]
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{{#set: common name=heparan sulfate biosynthesis (late stages)}}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction found=3}}
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{{#set: common name=geranylgeranyl_diphosphate_reductase}}
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{{#set: total reaction=13}}
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{{#set: gene associated=Tiso_gene_2613}}
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{{#set: completion rate=23.0}}
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{{#set: in pathway=PWY-5063}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:21, 21 March 2018

Pathway PWY-6558

  • taxonomic range:
  • common name:
    • heparan sulfate biosynthesis (late stages)
  • Synonym(s):

Reaction(s) found

3 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6558&oldid=41033"