Difference between revisions of "PWY-6661"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-KINASE-RXN SHIKIMATE-KINASE-RXN] == * direction: ** REVERSIBLE * common name: ** 3-dehydr...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-KINASE-RXN SHIKIMATE-KINASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
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** 3-dehydroquinate_synthase
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** octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.71 EC-2.7.1.71]
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* Synonym(s):
 
* Synonym(s):
 +
** octanoyl-ACP biosynthesis (mitochondria, yeast)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''9''' reactions in the full pathway
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** 1 [[SHIKIMATE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[SHIKIMATE-5P]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
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* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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* With common name(s):
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** 9 associated gene(s):
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** 1 shikimate[c] '''+''' 1 ATP[c] '''<=>''' 1 shikimate 3-phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_5939]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_14485]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_500]]
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* [[Tiso_gene_12435]]
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*** [[Tiso_gene_13394]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_136]]
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* [[Tiso_gene_3974]]
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*** [[Tiso_gene_15991]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_135]]
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***EC-NUMBER
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*** [[Tiso_gene_19302]]
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== Pathways  ==
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** 6 reconstruction source(s) associated:
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
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*** [[annotation-experimental_annotation]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* [[orthology]]:
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*** [[orthology-athaliana]]
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** [[pantograph]]:
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*** [[orthology-synechocystis]]
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*** [[esiliculosus]]
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*** [[manual-primary_network]]
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* [[manual]]:
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* [[4.2.1.58-RXN]]
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** [[primary_network]]
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** 6 associated gene(s):
−
* [[annotation]]:
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*** [[Tiso_gene_135]]
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** [[pathwaytools]]:
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*** [[Tiso_gene_13394]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_6884]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_500]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_7965]]
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*** [[Tiso_gene_2812]]
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*** [[Tiso_gene_5029]]
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*** [[Tiso_gene_3800]]
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** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-esiliculosus]]
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* [[MALONYL-COA-ACP-TRANSACYL-RXN]]
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** 7 associated gene(s):
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_136]]
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*** [[Tiso_gene_19309]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_18460]]
 +
*** [[Tiso_gene_13394]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN-14972]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-14973]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-9514]]
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** 10 associated gene(s):
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*** [[Tiso_gene_13394]]
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*** [[Tiso_gene_16579]]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_135]]
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*** [[Tiso_gene_500]]
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*** [[Tiso_gene_13083]]
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_9885]]
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*** [[Tiso_gene_10415]]
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*** [[Tiso_gene_624]]
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** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN-9515]]
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** 5 associated gene(s):
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*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_500]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN-9516]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_19302]]
 +
*** [[Tiso_gene_5939]]
 +
*** [[Tiso_gene_14485]]
 +
*** [[Tiso_gene_15991]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13121 13121]
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{{#set: taxonomic range=TAX-4751}}
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* LIGAND-RXN:
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{{#set: common name=octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02412 R02412]
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{{#set: common name=octanoyl-ACP biosynthesis (mitochondria, yeast)}}
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* UNIPROT:
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{{#set: reaction found=9}}
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** [http://www.uniprot.org/uniprot/P0A6D7 P0A6D7]
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/Q9PIB5 Q9PIB5]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P07547 P07547]
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** [http://www.uniprot.org/uniprot/P08566 P08566]
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** [http://www.uniprot.org/uniprot/P43880 P43880]
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** [http://www.uniprot.org/uniprot/P63600 P63600]
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** [http://www.uniprot.org/uniprot/Q9CEU1 Q9CEU1]
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** [http://www.uniprot.org/uniprot/P37944 P37944]
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** [http://www.uniprot.org/uniprot/P0A6E1 P0A6E1]
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** [http://www.uniprot.org/uniprot/P10880 P10880]
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** [http://www.uniprot.org/uniprot/Q00497 Q00497]
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** [http://www.uniprot.org/uniprot/P34003 P34003]
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** [http://www.uniprot.org/uniprot/P43906 P43906]
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** [http://www.uniprot.org/uniprot/P72796 P72796]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=3-dehydroquinate_synthase}}
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{{#set: ec number=EC-2.7.1.71}}
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−
{{#set: gene associated=Tiso_gene_12435|Tiso_gene_3974}}
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−
{{#set: in pathway=PWY-6163}}
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−
{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=esiliculosus}}
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−
{{#set: reconstruction category=manual}}
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−
{{#set: reconstruction source=primary_network}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=in-silico_annotation}}
+

Revision as of 19:20, 18 March 2018

Pathway PWY-7388

  • taxonomic range:
  • common name:
    • octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
  • Synonym(s):
    • octanoyl-ACP biosynthesis (mitochondria, yeast)

Reaction(s) found

9 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

"octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6661&oldid=23643"