Difference between revisions of "PWY-6672"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-c-methyl-d-erythritol_-cycl...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** 2-c-methyl-d-erythritol_-cyclodiphosphate_synthase
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** cis-genanyl-CoA degradation
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* ec number:
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** [http://enzyme.expasy.org/EC/4.6.1.12 EC-4.6.1.12]
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* Synonym(s):
 
* Synonym(s):
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** acyclic terpene utilization pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''9''' reactions in the full pathway
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** 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c]
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* [[ACETATE--COA-LIGASE-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[c] '''+''' 1 CMP[c]
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*** [[Tiso_gene_3617]]
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*** [[Tiso_gene_1612]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_3616]]
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Genes have been associated with this reaction based on different elements listed below.
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** 6 reconstruction source(s) associated:
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* [[Tiso_gene_9642]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-synechocystis]]
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***EC-NUMBER
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*** [[manual-primary_network]]
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** [[pantograph]]-[[synechocystis]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-11917]]
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** [[pantograph]]-[[creinhardtii]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_16181]]
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** 2 reconstruction source(s) associated:
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** '''9''' reactions found over '''9''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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*** [[orthology-esiliculosus]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-11919]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* [[orthology]]:
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*** [[Tiso_gene_14257]]
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** [[pantograph]]:
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** 1 reconstruction source(s) associated:
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*** [[creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[synechocystis]]
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* [[RXN-11921]]
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*** [[esiliculosus]]
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** 1 associated gene(s):
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* [[manual]]:
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*** [[Tiso_gene_16181]]
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** [[primary_network]]
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** 2 reconstruction source(s) associated:
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* [[annotation]]:
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*** [[orthology-athaliana]]
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** [[pathwaytools]]:
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*** [[orthology-esiliculosus]]
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*** [[experimental_annotation]]
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== Reaction(s) not found ==
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*** [[in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.1.3.26-RXN 4.1.3.26-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GERANOYL-COA-CARBOXYLASE-RXN GERANOYL-COA-CARBOXYLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ISOHEXENYLGLUTACONYL-COA-HYDRATASE-RXN ISOHEXENYLGLUTACONYL-COA-HYDRATASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11918 RXN-11918]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11920 RXN-11920]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* LIGAND-MAP:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23864 23864]
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** [http://www.genome.jp/dbget-bin/www_bget?map00281 map00281]
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* LIGAND-RXN:
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* UM-BBD-PWY : cit
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** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
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{{#set: taxonomic range=TAX-2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=cis-genanyl-CoA degradation}}
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{{#set: common name=2-c-methyl-d-erythritol_-cyclodiphosphate_synthase}}
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{{#set: common name=acyclic terpene utilization pathway}}
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{{#set: ec number=EC-4.6.1.12}}
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{{#set: reaction found=4}}
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{{#set: gene associated=Tiso_gene_9642}}
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{{#set: total reaction=9}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
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{{#set: completion rate=44.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:35, 21 March 2018

Pathway PWY-6672

  • taxonomic range:
  • common name:
    • cis-genanyl-CoA degradation
  • Synonym(s):
    • acyclic terpene utilization pathway

Reaction(s) found

4 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6672&oldid=42614"