Difference between revisions of "PWY-6708"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5285 RXN-5285] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** protochlorophyllide_re...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5285 RXN-5285] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** coumarins biosynthesis (engineered)
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** ORF
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** protochlorophyllide_reductase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.1.33 EC-1.3.1.33]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[DIVINYL-PROTOCHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[DIVINYLCHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADP]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_12275]]
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** 1 H+[c] '''+''' 1 3,8-divinyl protochlorophyllide a[c] '''+''' 1 NADPH[c] '''=>''' 1 3,8-divinyl chlorophyllide a[c] '''+''' 1 NADP+[c]
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*** [[Tiso_gene_14183]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_17141]]
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* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 2 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_10561]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_14561]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_19518]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-1126]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_10077]]
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*** [[Tiso_gene_14183]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_12275]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12349 RXN-12349]
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12350 RXN-12350]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12963 RXN-12963]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12965 RXN-12965]
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14987 RXN-14987]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14988 RXN-14988]
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14990 RXN-14990]
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* Category: [[manual]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16762 RXN-16762]
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** Source: [[manual-primary_network]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16763 RXN-16763]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9697 RXN-9697]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-4751}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06286 R06286]
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{{#set: taxonomic range=TAX-2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=coumarins biosynthesis (engineered)}}
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{{#set: common name=ORF}}
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{{#set: reaction found=3}}
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{{#set: common name=protochlorophyllide_reductase}}
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{{#set: total reaction=13}}
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{{#set: ec number=EC-1.3.1.33}}
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{{#set: completion rate=23.0}}
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{{#set: gene associated=Tiso_gene_17141|Tiso_gene_19518|Tiso_gene_10077}}
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{{#set: in pathway=CHLOROPHYLL-SYN}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:50, 21 March 2018

Reaction RXN-5285

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • protochlorophyllide_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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