Difference between revisions of "PWY-6722"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAMPYR-RXN PSERTRANSAMPYR-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** phosp...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200783 TAX-...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAMPYR-RXN PSERTRANSAMPYR-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200783 TAX-200783]
 
* common name:
 
* common name:
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** ORF
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** reductive TCA cycle II
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** phosphoserine_aminotransferase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.6.1.52 EC-2.6.1.52]
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* Synonym(s):
 
* Synonym(s):
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** reductive tricarboxylic acid cycle
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** reductive tricarboxylic acid pathway
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** reductive citric acid cycle
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** reverse citric acid cycle
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** carbon fixation
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** CO2 fixation
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** reductive carboxylic acid cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''12''' reactions in the full pathway
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** 1 [[GLT]][c] '''+''' 1 [[3OH-4P-OH-ALPHA-KETOBUTYRATE]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-PHOSPHONOOXY-THREONINE]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 L-glutamate[c] '''+''' 1 (3R)-3-hydroxy-2-oxo-4 phosphonooxybutanoate[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 4-phospho-hydroxy-L-threonine[c]
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*** [[Tiso_gene_13007]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_17123]]
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*** [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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* [[ACONITATEHYDR-RXN]]
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***EC-NUMBER
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** 1 associated gene(s):
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_13007]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_15686]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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* [[FUMHYDR-RXN]]
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***EC-NUMBER
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** 2 associated gene(s):
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_6720]]
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***EC-NUMBER
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*** [[Tiso_gene_3691]]
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** [[pantograph]]-[[esiliculosus]]
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** 6 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-experimental_annotation]]
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* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
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*** [[orthology-esiliculosus]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[orthology-athaliana]]
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* [[orthology]]:
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*** [[manual-primary_network]]
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** [[pantograph]]:
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*** [[orthology-creinhardtii]]
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*** [[esiliculosus]]
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* [[MALATE-DEH-RXN]]
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* [[annotation]]:
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** 2 associated gene(s):
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** [[pathwaytools]]:
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*** [[Tiso_gene_1990]]
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*** [[experimental_annotation]]
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*** [[Tiso_gene_2323]]
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*** [[in-silico_annotation]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_15846]]
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*** [[Tiso_gene_11866]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=CITRATE--COA-LIGASE-RXN CITRATE--COA-LIGASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R23-RXN R23-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7929 RXN-7929]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8457 RXN-8457]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-200783}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16573 16573]
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{{#set: common name=reductive TCA cycle II}}
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* LIGAND-RXN:
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{{#set: common name=reductive tricarboxylic acid cycle|reductive tricarboxylic acid pathway|reductive citric acid cycle|reverse citric acid cycle|carbon fixation|CO2 fixation|reductive carboxylic acid cycle}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05085 R05085]
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{{#set: reaction found=5}}
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{{#set: direction=REVERSIBLE}}
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{{#set: total reaction=12}}
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{{#set: common name=ORF}}
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{{#set: completion rate=42.0}}
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{{#set: common name=phosphoserine_aminotransferase}}
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{{#set: ec number=EC-2.6.1.52}}
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{{#set: gene associated=Tiso_gene_17123|Tiso_gene_15686}}
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{{#set: in pathway=PYRIDOXSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 19:06, 18 March 2018

Pathway PWY-5392

  • taxonomic range:
  • common name:
    • reductive TCA cycle II
  • Synonym(s):
    • reductive tricarboxylic acid cycle
    • reductive tricarboxylic acid pathway
    • reductive citric acid cycle
    • reverse citric acid cycle
    • carbon fixation
    • CO2 fixation
    • reductive carboxylic acid cycle

Reaction(s) found

5 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6722&oldid=21964"