Difference between revisions of "PWY-6733"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14196 RXN-14196] == * direction: ** LEFT-TO-RIGHT * common name: ** protein_pyr1-3 ** carbamoyl...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-31...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14196 RXN-14196] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
 
* common name:
 
* common name:
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** protein_pyr1-3
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** sporopollenin precursors biosynthesis
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** carbamoyl_phosphate_synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.2 EC-2.7.2]
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* Synonym(s):
 
* Synonym(s):
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** sporopollenin monomer biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''18''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[CARBAMATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c]
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* [[PALMITOYL-COA-HYDROLASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 ATP[c] '''+''' 1 carbamate[c] '''=>''' 1 ADP[c] '''+''' 1 carbamoyl phosphate[c]
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*** [[Tiso_gene_801]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_4975]]
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* [[RXN-12184]]
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** Source: [[annotation-in-silico_annotation]]
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** 9 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_9394]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_136]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_10876]]
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* Gene: [[Tiso_gene_4976]]
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*** [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_4191]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_13394]]
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* Gene: [[Tiso_gene_4685]]
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*** [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_7855]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_348]]
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** Source: [[annotation-experimental_annotation]]
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** 2 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[annotation-experimental_annotation]]
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* [[PWY-7693]], guadinomine B biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7693 PWY-7693]
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* [[RXN-16389]]
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** '''3''' reactions found over '''12''' reactions in the full pathway
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** 9 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_10876]]
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* Category: [[annotation]]
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*** [[Tiso_gene_9394]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_4191]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_136]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_7855]]
 +
*** [[Tiso_gene_135]]
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*** [[Tiso_gene_348]]
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*** [[Tiso_gene_13394]]
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
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* [[RXN-16401]]
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** 9 associated gene(s):
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_4191]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_348]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_9394]]
 +
*** [[Tiso_gene_7855]]
 +
*** [[Tiso_gene_136]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-16402]]
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** 9 associated gene(s):
 +
*** [[Tiso_gene_7855]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_348]]
 +
*** [[Tiso_gene_9394]]
 +
*** [[Tiso_gene_4191]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_13394]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
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* [[RXN-9624]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_7477]]
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*** [[Tiso_gene_801]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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* [[RXN-9627]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[RXN-9666]]
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** 1 associated gene(s):
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*** [[Tiso_gene_7477]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12186 RXN-12186]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16398 RXN-16398]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16399 RXN-16399]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16400 RXN-16400]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16403 RXN-16403]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16404 RXN-16404]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16405 RXN-16405]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16406 RXN-16406]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16407 RXN-16407]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16408 RXN-16408]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-3193}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30758 30758]
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{{#set: common name=sporopollenin precursors biosynthesis}}
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* LIGAND-RXN:
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{{#set: common name=sporopollenin monomer biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01395 R01395]
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{{#set: reaction found=8}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=18}}
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{{#set: common name=protein_pyr1-3}}
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{{#set: completion rate=44.0}}
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{{#set: common name=carbamoyl_phosphate_synthetase}}
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{{#set: ec number=EC-2.7.2}}
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{{#set: gene associated=Tiso_gene_4975|Tiso_gene_4976|Tiso_gene_4685}}
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{{#set: in pathway=PWY-7693}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:39, 21 March 2018

Pathway PWY-6733

  • taxonomic range:
  • common name:
    • sporopollenin precursors biosynthesis
  • Synonym(s):
    • sporopollenin monomer biosynthesis

Reaction(s) found

8 reactions found over 18 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6733&oldid=42971"