Difference between revisions of "PWY-6857"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-46 PWY-46] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] ** [ht...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
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[[Category:Pathway]]
 
[[Category:Pathway]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-46 PWY-46] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857] ==
 
* taxonomic range:
 
* taxonomic range:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
+
 
* common name:
 
* common name:
** putrescine biosynthesis III
+
** retinol biosynthesis
 
* Synonym(s):
 
* Synonym(s):
** ODC pathway
+
** vitamin A biosynthesis
 +
** retinal biosynthesis
 +
** retinoid biosynthesis
  
 
== Reaction(s) found ==
 
== Reaction(s) found ==
  '''1''' reactions found over '''1''' reactions in the full pathway
+
  '''3''' reactions found over '''7''' reactions in the full pathway
* [[ORNDECARBOX-RXN]]
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* [[RXN-12575]]
** 1 associated gene(s):
+
** 13 associated gene(s):
*** [[Tiso_gene_10737]]
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*** [[Tiso_gene_11351]]
** 1 reconstruction source(s) associated:
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*** [[Tiso_gene_1537]]
 +
*** [[Tiso_gene_4606]]
 +
*** [[Tiso_gene_17029]]
 +
*** [[Tiso_gene_1538]]
 +
*** [[Tiso_gene_9429]]
 +
*** [[Tiso_gene_19778]]
 +
*** [[Tiso_gene_4650]]
 +
*** [[Tiso_gene_12686]]
 +
*** [[Tiso_gene_10066]]
 +
*** [[Tiso_gene_16518]]
 +
*** [[Tiso_gene_1922]]
 +
*** [[Tiso_gene_2556]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
 +
* [[RXN-12579]]
 +
** 23 associated gene(s):
 +
*** [[Tiso_gene_2108]]
 +
*** [[Tiso_gene_17612]]
 +
*** [[Tiso_gene_3215]]
 +
*** [[Tiso_gene_17639]]
 +
*** [[Tiso_gene_11437]]
 +
*** [[Tiso_gene_8902]]
 +
*** [[Tiso_gene_17613]]
 +
*** [[Tiso_gene_9140]]
 +
*** [[Tiso_gene_288]]
 +
*** [[Tiso_gene_17614]]
 +
*** [[Tiso_gene_2109]]
 +
*** [[Tiso_gene_14063]]
 +
*** [[Tiso_gene_16817]]
 +
*** [[Tiso_gene_14062]]
 +
*** [[Tiso_gene_17143]]
 +
*** [[Tiso_gene_7915]]
 +
*** [[Tiso_gene_14109]]
 +
*** [[Tiso_gene_5716]]
 +
*** [[Tiso_gene_2983]]
 +
*** [[Tiso_gene_905]]
 +
*** [[Tiso_gene_19184]]
 +
*** [[Tiso_gene_14064]]
 +
*** [[Tiso_gene_906]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-13374]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_13078]]
 +
*** [[Tiso_gene_4653]]
 +
*** [[Tiso_gene_7740]]
 +
*** [[Tiso_gene_13079]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.135-RXN 2.3.1.135-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10841 RXN-10841]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12548 RXN-12548]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12549 RXN-12549]
 
== External links  ==
 
== External links  ==
* ECOCYC:
+
{{#set: taxonomic range=TAX-33208}}
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-46 PWY-46]
+
{{#set: common name=retinol biosynthesis}}
* ARACYC:
+
{{#set: common name=vitamin A biosynthesis|retinal biosynthesis|retinoid biosynthesis}}
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-46 PWY-46]
+
{{#set: reaction found=3}}
{{#set: taxonomic range=TAX-2}}
+
{{#set: total reaction=7}}
{{#set: taxonomic range=TAX-2759}}
+
{{#set: completion rate=43.0}}
{{#set: common name=putrescine biosynthesis III}}
+
{{#set: common name=ODC pathway}}
+
{{#set: reaction found=1}}
+
{{#set: total reaction=1}}
+
{{#set: completion rate=100.0}}
+

Latest revision as of 20:25, 21 March 2018

Pathway PWY-6857

  • taxonomic range:
  • common name:
    • retinol biosynthesis
  • Synonym(s):
    • vitamin A biosynthesis
    • retinal biosynthesis
    • retinoid biosynthesis

Reaction(s) found

3 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links