Difference between revisions of "PWY-6893"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5467 RXN-5467] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
(Created page with "Category:Gene == Gene Tiso_gene_7477 == * left end position: ** 5488 * transcription direction: ** POSITIVE * right end position: ** 7069 * centisome position: ** 23.10445...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5467 RXN-5467] ==
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== Gene Tiso_gene_7477 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 5488
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.4.1.259 EC-2.4.1.259]
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** POSITIVE
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* right end position:
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** 7069
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* centisome position:
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** 23.10445   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[ACYL-COA-HYDROLASE-RXN]]
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** 1 [[CPD-5165]][c] '''+''' 1 [[CPD-171]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[DOLICHOLP]][c] '''+''' 1 [[CPD-5166]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a dolichyl β-D-mannosyl phosphate[c] '''=>''' 1 H+[c] '''+''' 1 a dolichyl phosphate[c] '''+''' 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c]
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* [[LINOLEOYL-RXN]]
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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* [[RXN-10708]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* [[Tiso_gene_8232]]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-13430]]
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== Pathways ==
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** [[pantograph]]-[[athaliana]]
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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* [[RXN-13435]]
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** '''19''' reactions found over '''19''' reactions in the full pathway
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** [[pantograph]]-[[athaliana]]
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== Reconstruction information  ==
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* [[RXN-13446]]
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* [[orthology]]:
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]:
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* [[RXN-15013]]
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*** [[esiliculosus]]
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** [[pantograph]]-[[athaliana]]
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* [[annotation]]:
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* [[RXN-16063]]
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** [[pathwaytools]]:
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** [[pantograph]]-[[athaliana]]
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*** [[in-silico_annotation]]
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* [[RXN-9624]]
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** [[pantograph]]-[[athaliana]]
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* [[RXN-9629]]
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** [[pantograph]]-[[athaliana]]
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* [[RXN-9666]]
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** [[pantograph]]-[[athaliana]]
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== Pathways associated ==
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* [[PWY-1121]]
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* [[PWY-321]]
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* [[PWY-5972]]
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* [[PWY-6733]]
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* [[PWY-5996]]
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* [[PWY-735]]
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* [[CENTBENZCOA-PWY]]
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* [[PWY-7401]]
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* [[PWY3O-355]]
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* [[PWY-6917]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=5488}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29534 29534]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=7069}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06259 R06259]
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{{#set: centisome position=23.10445    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ACYL-COA-HYDROLASE-RXN|LINOLEOYL-RXN|RXN-10708|RXN-13430|RXN-13435|RXN-13446|RXN-15013|RXN-16063|RXN-9624|RXN-9629|RXN-9666}}
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{{#set: ec number=EC-2.4.1.259}}
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{{#set: pathway associated=PWY-1121|PWY-321|PWY-5972|PWY-6733|PWY-5996|PWY-735|CENTBENZCOA-PWY|PWY-7401|PWY3O-355|PWY-6917}}
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{{#set: gene associated=Tiso_gene_8232}}
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 17:36, 10 January 2018

Gene Tiso_gene_7477

  • left end position:
    • 5488
  • transcription direction:
    • POSITIVE
  • right end position:
    • 7069
  • centisome position:
    • 23.10445
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6893&oldid=13753"