Difference between revisions of "PWY-6894"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribosylformylgly...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPS GPPS] == * direction: ** LEFT-TO-RIGHT * common name: ** geranyl pyrophosphate synthase * Syno...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPS GPPS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phosphoribosylformylglycinamidine_synthase-like
+
** geranyl pyrophosphate synthase
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/6.3.5.3 EC-6.3.5.3]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c]
+
** 1.0 [[CPD-4211]][c] '''+''' 1.0 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1.0 [[PPI]][c] '''+''' 1.0 [[GERANYL-PP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 L-glutamine[c] '''+''' 1 H2O[c] '''+''' 1 N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 L-glutamate[c] '''+''' 1 2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine[c]
+
** 1.0 dimethylallyl diphosphate[c] '''+''' 1.0 isopentenyl diphosphate[c] '''=>''' 1.0 diphosphate[c] '''+''' 1.0 geranyl diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5865]]
+
* [[Tiso_gene_16284]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[creinhardtii]]
−
***EC-NUMBER
+
* [[Tiso_gene_18201]]
−
** EXPERIMENTAL_ANNOTATION
+
** [[pantograph]]-[[creinhardtii]]
−
***EC-NUMBER
+
* [[Tiso_gene_2848]]
−
** [[pantograph]]-[[athaliana]]
+
** [[pantograph]]-[[creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[athaliana]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17129 17129]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04463 R04463]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O67691 O67691]
 
−
** [http://www.uniprot.org/uniprot/Q9UXW5 Q9UXW5]
 
−
** [http://www.uniprot.org/uniprot/Q9PNY0 Q9PNY0]
 
−
** [http://www.uniprot.org/uniprot/O28339 O28339]
 
−
** [http://www.uniprot.org/uniprot/Q9PHZ7 Q9PHZ7]
 
−
** [http://www.uniprot.org/uniprot/O26270 O26270]
 
−
** [http://www.uniprot.org/uniprot/Q59042 Q59042]
 
−
** [http://www.uniprot.org/uniprot/Q58660 Q58660]
 
−
** [http://www.uniprot.org/uniprot/O27427 O27427]
 
−
** [http://www.uniprot.org/uniprot/Q9JWC5 Q9JWC5]
 
−
** [http://www.uniprot.org/uniprot/P35852 P35852]
 
−
** [http://www.uniprot.org/uniprot/P38972 P38972]
 
−
** [http://www.uniprot.org/uniprot/Q55843 Q55843]
 
−
** [http://www.uniprot.org/uniprot/Q55037 Q55037]
 
−
** [http://www.uniprot.org/uniprot/P12041 P12041]
 
−
** [http://www.uniprot.org/uniprot/P12042 P12042]
 
−
** [http://www.uniprot.org/uniprot/P15254 P15254]
 
−
** [http://www.uniprot.org/uniprot/O14228 O14228]
 
−
** [http://www.uniprot.org/uniprot/P35421 P35421]
 
−
** [http://www.uniprot.org/uniprot/Q9ZB07 Q9ZB07]
 
−
** [http://www.uniprot.org/uniprot/Q9ZB06 Q9ZB06]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=phosphoribosylformylglycinamidine_synthase-like}}
+
{{#set: common name=geranyl pyrophosphate synthase}}
−
{{#set: ec number=EC-6.3.5.3}}
+
{{#set: gene associated=Tiso_gene_16284|Tiso_gene_18201|Tiso_gene_2848}}
−
{{#set: gene associated=Tiso_gene_5865}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=athaliana}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 19:02, 18 March 2018

Reaction GPPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • geranyl pyrophosphate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 dimethylallyl diphosphate[c] + 1.0 isopentenyl diphosphate[c] => 1.0 diphosphate[c] + 1.0 geranyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6894&oldid=21379"