Difference between revisions of "PWY-6894"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribosylformylgly...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6894 PWY-6894] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6894 PWY-6894] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** phosphoribosylformylglycinamidine_synthase-like
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** thiamine diphosphate biosynthesis I (E. coli)
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.5.3 EC-6.3.5.3]
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* Synonym(s):
 
* Synonym(s):
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** vitamin B1 biosynthesis
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** thiamin diphosphate biosynthesis I (E. coli)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''2''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c]
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* [[RXN-12611]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 ATP[c] '''+''' 1 L-glutamine[c] '''+''' 1 H2O[c] '''+''' 1 N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 L-glutamate[c] '''+''' 1 2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine[c]
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*** [[Tiso_gene_2159]]
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*** [[Tiso_gene_2160]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_10320]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Tiso_gene_5865]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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== Reaction(s) not found ==
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=THI-P-KIN-RXN THI-P-KIN-RXN]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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== Pathways  ==
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* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17129 17129]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6894 PWY-6894]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04463 R04463]
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{{#set: common name=thiamine diphosphate biosynthesis I (E. coli)}}
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* UNIPROT:
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{{#set: common name=vitamin B1 biosynthesis|thiamin diphosphate biosynthesis I (E. coli)}}
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** [http://www.uniprot.org/uniprot/O67691 O67691]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/Q9UXW5 Q9UXW5]
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{{#set: total reaction=2}}
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** [http://www.uniprot.org/uniprot/Q9PNY0 Q9PNY0]
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/O28339 O28339]
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** [http://www.uniprot.org/uniprot/Q9PHZ7 Q9PHZ7]
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** [http://www.uniprot.org/uniprot/O26270 O26270]
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** [http://www.uniprot.org/uniprot/Q59042 Q59042]
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** [http://www.uniprot.org/uniprot/Q58660 Q58660]
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** [http://www.uniprot.org/uniprot/O27427 O27427]
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** [http://www.uniprot.org/uniprot/Q9JWC5 Q9JWC5]
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** [http://www.uniprot.org/uniprot/P35852 P35852]
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** [http://www.uniprot.org/uniprot/P38972 P38972]
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** [http://www.uniprot.org/uniprot/Q55843 Q55843]
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** [http://www.uniprot.org/uniprot/Q55037 Q55037]
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** [http://www.uniprot.org/uniprot/P12041 P12041]
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** [http://www.uniprot.org/uniprot/P12042 P12042]
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** [http://www.uniprot.org/uniprot/P15254 P15254]
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** [http://www.uniprot.org/uniprot/O14228 O14228]
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** [http://www.uniprot.org/uniprot/P35421 P35421]
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** [http://www.uniprot.org/uniprot/Q9ZB07 Q9ZB07]
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** [http://www.uniprot.org/uniprot/Q9ZB06 Q9ZB06]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoribosylformylglycinamidine_synthase-like}}
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{{#set: ec number=EC-6.3.5.3}}
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{{#set: gene associated=Tiso_gene_5865}}
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{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:15, 21 March 2018

Pathway PWY-6894

  • taxonomic range:
  • common name:
    • thiamine diphosphate biosynthesis I (E. coli)
  • Synonym(s):
    • vitamin B1 biosynthesis
    • thiamin diphosphate biosynthesis I (E. coli)

Reaction(s) found

1 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6894&oldid=40431"