Difference between revisions of "PWY-6901"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GST-RXN GST-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** glutathione_s-transferase *...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GST-RXN GST-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** ORF
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** superpathway of glucose and xylose degradation
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** glutathione_s-transferase
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** glutathione_s-
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** phi_class_glutathione_s-transferase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.18 EC-2.5.1.18]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''12''' reactions in the full pathway
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** 1 [[GLUTATHIONE]][c] '''+''' 1 [[1-CHLORO-24-DINITROBENZENE]][c] '''<=>''' 1 [[CL-]][c] '''+''' 1 [[S-24-DINITROPHENYLGLUTATHIONE]][c] '''+''' 1 [[PROTON]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 glutathione[c] '''+''' 1 1-chloro-2,4-dinitrobenzene[c] '''<=>''' 1 chloride[c] '''+''' 1 2,4-dinitrophenyl-S-glutathione[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_1104]]
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** 7 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_8509]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_19041]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-creinhardtii]]
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* [[Tiso_gene_5129]]
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* [[2TRANSKETO-RXN]]
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** IN-SILICO_ANNOTATION
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** 2 associated gene(s):
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***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_11559]]
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* [[Tiso_gene_8508]]
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*** [[Tiso_gene_5008]]
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** IN-SILICO_ANNOTATION
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** 5 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_19791]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-creinhardtii]]
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***EC-NUMBER
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*** [[manual-primary_network]]
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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* [[3PGAREARR-RXN]]
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* [[Tiso_gene_3233]]
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** 16 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_15048]]
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***EC-NUMBER
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*** [[Tiso_gene_7201]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_9922]]
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***EC-NUMBER
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*** [[Tiso_gene_2841]]
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* [[Tiso_gene_6036]]
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*** [[Tiso_gene_14530]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16754]]
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***EC-NUMBER
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*** [[Tiso_gene_2365]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_16271]]
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***EC-NUMBER
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*** [[Tiso_gene_5468]]
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* [[Tiso_gene_8389]]
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*** [[Tiso_gene_20311]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_14664]]
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***EC-NUMBER
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*** [[Tiso_gene_15391]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_14212]]
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***EC-NUMBER
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*** [[Tiso_gene_10516]]
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* [[Tiso_gene_2775]]
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*** [[Tiso_gene_9923]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_2667]]
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***AUTOMATED-NAME-MATCH
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** 7 reconstruction source(s) associated:
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* [[Tiso_gene_20110]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-athaliana]]
−
***EC-NUMBER
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*** [[orthology-synechocystis]]
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== Pathways  ==
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*** [[manual-primary_network]]
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== Reconstruction information  ==
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*** [[orthology-creinhardtii]]
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* [[orthology]]:
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* [[GAPOXNPHOSPHN-RXN]]
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** [[pantograph]]:
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** 5 associated gene(s):
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*** [[esiliculosus]]
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*** [[Tiso_gene_20000]]
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* [[annotation]]:
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*** [[Tiso_gene_235]]
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** [[pathwaytools]]:
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*** [[Tiso_gene_10646]]
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*** [[experimental_annotation]]
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*** [[Tiso_gene_3344]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_6766]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PENTOSE-P-PWY]]
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** 0 associated gene:
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_18264]]
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_14642]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
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* [[XYLCAT-PWY]]
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** 0 associated gene:
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=L-LACTATE-DEHYDROGENASE-RXN L-LACTATE-DEHYDROGENASE-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=REVERSIBLE}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=ORF}}
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{{#set: common name=superpathway of glucose and xylose degradation}}
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{{#set: common name=glutathione_s-transferase}}
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{{#set: reaction found=8}}
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{{#set: common name=glutathione_s-}}
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{{#set: total reaction=12}}
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{{#set: common name=phi_class_glutathione_s-transferase}}
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{{#set: completion rate=67.0}}
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{{#set: ec number=EC-2.5.1.18}}
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−
{{#set: gene associated=Tiso_gene_1104|Tiso_gene_8509|Tiso_gene_19041|Tiso_gene_5129|Tiso_gene_8508|Tiso_gene_19791|Tiso_gene_3233|Tiso_gene_6036|Tiso_gene_8389|Tiso_gene_2775|Tiso_gene_20110}}
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−
{{#set: in pathway=}}
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−
{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=esiliculosus}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:28, 21 March 2018

Pathway PWY-6901

  • taxonomic range:
  • common name:
    • superpathway of glucose and xylose degradation
  • Synonym(s):

Reaction(s) found

8 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6901&oldid=41831"