Difference between revisions of "CPD-12513"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] == * direction: ** REVERSIBLE * common name: ** ghmp_n-terminal_doma...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** ghmp_n-terminal_domain-containing_protein
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** superpathway of glucose and xylose degradation
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** ORF
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** galactokinase-like_protein
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.6 EC-2.7.1.6]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''12''' reactions in the full pathway
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** 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GALACTOSE-1P]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 &alpha;-D-galactose[c] '''+''' 1 ATP[c] '''<=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 &alpha;-D-galactose 1-phosphate[c]
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*** [[Tiso_gene_14718]]
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*** [[Tiso_gene_8720]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_10797]]
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** 7 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[manual-primary_network]]
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* [[Tiso_gene_5041]]
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*** [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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* [[2TRANSKETO-RXN]]
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***EC-NUMBER
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** 2 associated gene(s):
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* [[Tiso_gene_5042]]
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*** [[Tiso_gene_11559]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_5008]]
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***EC-NUMBER
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** 5 reconstruction source(s) associated:
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* [[Tiso_gene_11795]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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*** [[orthology-creinhardtii]]
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* [[Tiso_gene_12191]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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* [[3PGAREARR-RXN]]
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* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
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** 16 associated gene(s):
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[Tiso_gene_2667]]
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* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
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*** [[Tiso_gene_9922]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[Tiso_gene_15048]]
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* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
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*** [[Tiso_gene_2841]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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*** [[Tiso_gene_14530]]
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* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
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*** [[Tiso_gene_16754]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_2365]]
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== Reconstruction information  ==
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*** [[Tiso_gene_16271]]
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* [[orthology]]:
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*** [[Tiso_gene_5468]]
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** [[pantograph]]:
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*** [[Tiso_gene_20311]]
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*** [[creinhardtii]]
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*** [[Tiso_gene_14664]]
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*** [[athaliana]]
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*** [[Tiso_gene_15391]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_14212]]
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* [[annotation]]:
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*** [[Tiso_gene_10516]]
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** [[pathwaytools]]:
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*** [[Tiso_gene_9923]]
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*** [[experimental_annotation]]
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*** [[Tiso_gene_7201]]
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*** [[in-silico_annotation]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_6766]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_235]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PENTOSE-P-PWY]]
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** 0 associated gene:
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_14642]]
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*** [[Tiso_gene_18264]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[XYLCAT-PWY]]
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** 0 associated gene:
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=L-LACTATE-DEHYDROGENASE-RXN L-LACTATE-DEHYDROGENASE-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13553 13553]
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{{#set: common name=superpathway of glucose and xylose degradation}}
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* LIGAND-RXN:
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{{#set: reaction found=8}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
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{{#set: total reaction=12}}
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* UNIPROT:
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{{#set: completion rate=67.0}}
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** [http://www.uniprot.org/uniprot/P09608 P09608]
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** [http://www.uniprot.org/uniprot/Q01415 Q01415]
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** [http://www.uniprot.org/uniprot/P22713 P22713]
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** [http://www.uniprot.org/uniprot/P31767 P31767]
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** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
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** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
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** [http://www.uniprot.org/uniprot/P96993 P96993]
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** [http://www.uniprot.org/uniprot/P04385 P04385]
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** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
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** [http://www.uniprot.org/uniprot/P13227 P13227]
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** [http://www.uniprot.org/uniprot/P39574 P39574]
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** [http://www.uniprot.org/uniprot/P13045 P13045]
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** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ghmp_n-terminal_domain-containing_protein}}
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{{#set: common name=ORF}}
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{{#set: common name=galactokinase-like_protein}}
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{{#set: ec number=EC-2.7.1.6}}
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{{#set: gene associated=Tiso_gene_10797|Tiso_gene_5041|Tiso_gene_5042|Tiso_gene_11795|Tiso_gene_12191}}
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{{#set: in pathway=PWY-6317|PWY66-422|PWY-6527|PWY-3821}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 19:14, 18 March 2018

Pathway PWY-6901

  • taxonomic range:
  • common name:
    • superpathway of glucose and xylose degradation
  • Synonym(s):

Reaction(s) found

8 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-12513&oldid=22853"