Difference between revisions of "PWY-7003"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14219 RXN-14219] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * Synonym(s): == React...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14219 RXN-14219] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** ORF
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** glycerol degradation to butanol
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''10''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[DUTP]][c] '''=>''' 1 [[DUDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 H2O[c] '''+''' 1 dUTP[c] '''=>''' 1 dUDP[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_12899]]
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** 7 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-athaliana]]
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* [[Tiso_gene_20236]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[manual-primary_network]]
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== Pathways  ==
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*** [[orthology-creinhardtii]]
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== Reconstruction information  ==
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* [[3PGAREARR-RXN]]
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* [[orthology]]:
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** 16 associated gene(s):
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** [[pantograph]]:
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*** [[Tiso_gene_15048]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_7201]]
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* [[annotation]]:
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*** [[Tiso_gene_9922]]
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** [[pathwaytools]]:
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*** [[Tiso_gene_2841]]
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*** [[experimental_annotation]]
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*** [[Tiso_gene_14530]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
 +
*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_235]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_6766]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_18206]]
 +
*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_18264]]
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_14642]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PWY-6131]]
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** 0 associated gene:
 +
* [[PWY-6583]]
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** 0 associated gene:
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_19961]]
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_19962]]
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*** [[Tiso_gene_10646]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=ORF}}
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{{#set: common name=glycerol degradation to butanol}}
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{{#set: gene associated=Tiso_gene_12899|Tiso_gene_20236}}
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{{#set: reaction found=8}}
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{{#set: in pathway=}}
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{{#set: total reaction=10}}
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{{#set: reconstruction category=orthology}}
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{{#set: completion rate=80.0}}
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{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=esiliculosus}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:37, 21 March 2018

Pathway PWY-7003

  • taxonomic range:
  • common name:
    • glycerol degradation to butanol
  • Synonym(s):

Reaction(s) found

8 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7003&oldid=42783"