Difference between revisions of "PWY-7091"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein] == * common name: **...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMHYDR-RXN FUMHYDR-RXN] == * direction: ** REVERSIBLE * common name: ** pol-related * ec number: *...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMHYDR-RXN FUMHYDR-RXN] ==
 +
* direction:
 +
** REVERSIBLE
 
* common name:
 
* common name:
−
** a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine
+
** pol-related
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/4.2.1.2 EC-4.2.1.2]
 
* Synonym(s):
 
* Synonym(s):
−
** β-D-glucosyluronate-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[proteoglycan]
+
** fumarate hydration
−
** β-D-glucosyluronate-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosylproteoglycan
+
** malate dehydration
−
** β-D-glucuronosyl-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucuronosyl-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein]
+
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[2.4.1.224-RXN]]
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* With identifiers:
−
== Reaction(s) known to produce the compound ==
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** 1 [[MAL]][c] '''<=>''' 1 [[FUM]][c] '''+''' 1 [[WATER]][c]
−
* [[2.4.1.225-RXN]]
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* With common name(s):
−
== Reaction(s) of unknown directionality ==
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** 1 (S)-malate[c] '''<=>''' 1 fumarate[c] '''+''' 1 H2O[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_6720]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_3691]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
== Pathways  ==
 +
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 +
** '''7''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 +
** '''5''' reactions found over '''12''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''7''' reactions found over '''12''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''9''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''18''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[P108-PWY]], pyruvate fermentation to propanoate I: [http://metacyc.org/META/NEW-IMAGE?object=P108-PWY P108-PWY]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[athaliana]]
 +
*** [[esiliculosus]]
 +
* [[manual]]:
 +
** [[primary_network]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=a [protein]-3-O-(&beta;-D-GlcA-(1&rarr;3)-&alpha;-D-GlcNAc-(1&rarr;4)-&beta;-D-GlcA-(1&rarr;3)-&beta;-D-Gal-(1&rarr;3)-&beta;-D-Gal-(1&rarr;4)-&beta;-D-Xyl)-L-serine}}
+
* RHEA:
−
{{#set: common name=&beta;-D-glucosyluronate-(1->3)-&alpha;-N-acetyl-D-glucosaminyl-(1->4)-&beta;-D-glucosyluronate-(1->3)-&beta;-D-galactosyl-(1->3)-&beta;-D-galactosyl-(1->4)-&beta;-D-xylosyl-[proteoglycan]|&beta;-D-glucosyluronate-(1->3)-&alpha;-N-acetyl-D-glucosaminyl-(1->4)-&beta;-D-glucosyluronate-(1->3)-&beta;-D-galactosyl-(1->3)-&beta;-D-galactosyl-(1->4)-&beta;-D-xylosylproteoglycan|&beta;-D-glucuronosyl-(1->3)-&alpha;-N-acetyl-D-glucosaminyl-(1->4)-&beta;-D-glucuronosyl-(1->3)-&beta;-D-galactosyl-(1->3)-&beta;-D-galactosyl-(1->4)-&beta;-D-xylosyl-[core protein]}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12460 12460]
−
{{#set: consumed by=2.4.1.224-RXN}}
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* PIR:
−
{{#set: produced by=2.4.1.225-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47692 A47692]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49760 A49760]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64377 A64377]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81281 A81281]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81807 A81807]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B44511 B44511]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81862 B81862]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64461 E64461]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64685 E64685]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70896 H70896]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H71462 H71462]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4293 JC4293]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4982 JC4982]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0062 PA0062]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40448 S40448]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76348 S76348]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T00433 T00433]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07374 T07374]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41265 T41265]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T43727 T43727]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45269 T45269]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBSC8 UFBSC8]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBYM UFBYM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFEC UFEC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFECAQ UFECAQ]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFHUM UFHUM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFPG UFPG]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFRT UFRT]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01082 R01082]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q04718 Q04718]
 +
** [http://www.uniprot.org/uniprot/Q58034 Q58034]
 +
** [http://www.uniprot.org/uniprot/O69294 O69294]
 +
** [http://www.uniprot.org/uniprot/Q9JTE3 Q9JTE3]
 +
** [http://www.uniprot.org/uniprot/P14407 P14407]
 +
** [http://www.uniprot.org/uniprot/Q9JTR0 Q9JTR0]
 +
** [http://www.uniprot.org/uniprot/Q58690 Q58690]
 +
** [http://www.uniprot.org/uniprot/O25883 O25883]
 +
** [http://www.uniprot.org/uniprot/O53446 O53446]
 +
** [http://www.uniprot.org/uniprot/O84863 O84863]
 +
** [http://www.uniprot.org/uniprot/Q51404 Q51404]
 +
** [http://www.uniprot.org/uniprot/Q7M4Z3 Q7M4Z3]
 +
** [http://www.uniprot.org/uniprot/P39461 P39461]
 +
** [http://www.uniprot.org/uniprot/Q55674 Q55674]
 +
** [http://www.uniprot.org/uniprot/P93033 P93033]
 +
** [http://www.uniprot.org/uniprot/Q43180 Q43180]
 +
** [http://www.uniprot.org/uniprot/O94552 O94552]
 +
** [http://www.uniprot.org/uniprot/O66271 O66271]
 +
** [http://www.uniprot.org/uniprot/Q60022 Q60022]
 +
** [http://www.uniprot.org/uniprot/P07343 P07343]
 +
** [http://www.uniprot.org/uniprot/P08417 P08417]
 +
** [http://www.uniprot.org/uniprot/P05042 P05042]
 +
** [http://www.uniprot.org/uniprot/P0AC33 P0AC33]
 +
** [http://www.uniprot.org/uniprot/P10173 P10173]
 +
** [http://www.uniprot.org/uniprot/P14408 P14408]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=pol-related}}
 +
{{#set: ec number=EC-4.2.1.2}}
 +
{{#set: common name=fumarate hydration|malate dehydration}}
 +
{{#set: gene associated=Tiso_gene_6720|Tiso_gene_3691}}
 +
{{#set: in pathway=PWY-561|PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|P105-PWY|PWY-6969|FERMENTATION-PWY|PWY-6728|REDCITCYC|PWY-7254|P108-PWY|TCA|PWY66-398|PWY-5690}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:37, 10 January 2018

Reaction FUMHYDR-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • pol-related
  • ec number:
  • Synonym(s):
    • fumarate hydration
    • malate dehydration

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-malate[c] <=> 1 fumarate[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-561, superpathway of glyoxylate cycle and fatty acid degradation: PWY-561
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 9 reactions found over 11 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle: P42-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 5 reactions found over 12 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 7 reactions found over 12 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 9 reactions found over 16 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 5 reactions found over 9 reactions in the full pathway
  • P108-PWY, pyruvate fermentation to propanoate I: P108-PWY
    • 3 reactions found over 7 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 7 reactions found over 10 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links








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