Difference between revisions of "PWY-7115"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10656 RXN-10656] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyacyl-[acyl-carrier...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10656 RXN-10656] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
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** C4 photosynthetic carbon assimilation cycle, NAD-ME type
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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* Synonym(s):
 
* Synonym(s):
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** C4 photosynthesis, NAD-ME type
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''9''' reactions in the full pathway
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** 1 [[3-hydroxy-cis-D7-tetraecenoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Trans-D3-cis-D7-tetradecenoyl-ACPs]][c]
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* [[1.1.1.39-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 a (3R)-3-hydroxy cis Δ7-tetradecenoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-Δ3-cis-Δ7-tetradecenoyl-[acp][c]
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*** [[Tiso_gene_12896]]
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*** [[Tiso_gene_6675]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_12200]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
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* [[Tiso_gene_6884]]
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*** [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[ALANINE-AMINOTRANSFERASE-RXN]]
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* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6282 PWY-6282]
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** 2 associated gene(s):
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** '''9''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_5959]]
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== Reconstruction information  ==
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*** [[Tiso_gene_10957]]
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* [[annotation]]:
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** 5 reconstruction source(s) associated:
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** [[pathwaytools]]:
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*** [[annotation-experimental_annotation]]
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*** [[experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[ASPAMINOTRANS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_17718]]
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*** [[Tiso_gene_6815]]
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*** [[Tiso_gene_13538]]
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*** [[Tiso_gene_15680]]
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*** [[Tiso_gene_17809]]
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*** [[Tiso_gene_12889]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_2323]]
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*** [[Tiso_gene_1990]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN-13697]]
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** 6 associated gene(s):
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*** [[Tiso_gene_13538]]
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*** [[Tiso_gene_12889]]
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*** [[Tiso_gene_6815]]
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*** [[Tiso_gene_17718]]
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*** [[Tiso_gene_17809]]
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*** [[Tiso_gene_15680]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-13698]]
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** 2 associated gene(s):
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*** [[Tiso_gene_10957]]
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*** [[Tiso_gene_5959]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-5224]]
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** 10 associated gene(s):
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*** [[Tiso_gene_18927]]
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*** [[Tiso_gene_6150]]
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*** [[Tiso_gene_1600]]
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*** [[Tiso_gene_3056]]
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*** [[Tiso_gene_9852]]
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*** [[Tiso_gene_17511]]
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*** [[Tiso_gene_19413]]
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*** [[Tiso_gene_20230]]
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*** [[Tiso_gene_19414]]
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*** [[Tiso_gene_7660]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: common name=3-hydroxyacyl-[acyl-carrier-protein] dehydratase}}
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{{#set: common name=C4 photosynthetic carbon assimilation cycle, NAD-ME type}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: common name=C4 photosynthesis, NAD-ME type}}
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{{#set: gene associated=Tiso_gene_6884}}
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{{#set: reaction found=7}}
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{{#set: in pathway=PWY-6282}}
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{{#set: total reaction=9}}
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{{#set: reconstruction category=annotation}}
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{{#set: completion rate=78.0}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation}}
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Latest revision as of 20:05, 21 March 2018

Pathway PWY-7115

  • taxonomic range:
  • common name:
    • C4 photosynthetic carbon assimilation cycle, NAD-ME type
  • Synonym(s):
    • C4 photosynthesis, NAD-ME type

Reaction(s) found

7 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7115&oldid=39436"