Difference between revisions of "PWY-7124"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_c...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4930 TAX-49...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4930 TAX-4930]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** phosphoglycerate_chloroplastic
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** ethylene biosynthesis V (engineered)
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** phosphoglycerate_kinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.2.3 EC-2.7.2.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''10''' reactions in the full pathway
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** 1 [[G3P]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[DPG]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 3-phospho-D-glycerate[c] '''+''' 1 ATP[c] '''<=>''' 1 ADP[c] '''+''' 1 1,3-bisphospho-D-glycerate[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* Gene: [[Tiso_gene_3526]]
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** 7 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_18264]]
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*** [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: EC-NUMBER
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*** [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_3527]]
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* [[3PGAREARR-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 16 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_15048]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_7201]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_9922]]
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_2841]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_14530]]
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_16754]]
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* Gene: [[Tiso_gene_18263]]
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*** [[Tiso_gene_2365]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_16271]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_5468]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_20311]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_14664]]
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* Gene: [[Tiso_gene_12104]]
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*** [[Tiso_gene_15391]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_14212]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_10516]]
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* Gene: [[Tiso_gene_14642]]
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*** [[Tiso_gene_9923]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_2667]]
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*** Assignment: EC-NUMBER
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** 7 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-experimental_annotation]]
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
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*** [[orthology-esiliculosus]]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
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*** [[orthology-athaliana]]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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*** [[manual-primary_network]]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
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* [[ACONITATEDEHYDR-RXN]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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** 1 associated gene(s):
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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*** [[Tiso_gene_13007]]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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*** [[annotation-experimental_annotation]]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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*** [[orthology-synechocystis]]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[ACONITATEHYDR-RXN]]
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
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** 1 associated gene(s):
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** '''8''' reactions found over '''11''' reactions in the full pathway
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*** [[Tiso_gene_13007]]
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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** 2 reconstruction source(s) associated:
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** '''13''' reactions found over '''13''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
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*** [[annotation-experimental_annotation]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[CITSYN-RXN]]
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** 4 associated gene(s):
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** '''14''' reactions found over '''18''' reactions in the full pathway
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*** [[Tiso_gene_18030]]
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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*** [[Tiso_gene_9601]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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*** [[Tiso_gene_9603]]
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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*** [[Tiso_gene_9602]]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
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*** [[annotation-experimental_annotation]]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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*** [[manual-primary_network]]
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* Category: [[orthology]]
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* [[ISOCITDEH-RXN]]
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** Source: [[orthology-athaliana]]
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** 2 associated gene(s):
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_18262]]
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_10809]]
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*** Tool: [[pantograph]]
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** 4 reconstruction source(s) associated:
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** Source: [[orthology-synechocystis]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pantograph]]
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*** [[manual-primary_network]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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* Category: [[manual]]
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* [[PHOTOALL-PWY]]
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** Source: [[manual-primary_network]]
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** 0 associated gene:
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* Category: [[annotation]]
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== Reaction(s) not found ==
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** Source: [[annotation-experimental_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12538 RXN-12538]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-4930}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14801 14801]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=ethylene biosynthesis V (engineered)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01512 R01512]
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{{#set: reaction found=7}}
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* UNIPROT:
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{{#set: total reaction=10}}
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** [http://www.uniprot.org/uniprot/P11977 P11977]
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{{#set: completion rate=70.0}}
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** [http://www.uniprot.org/uniprot/P09411 P09411]
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** [http://www.uniprot.org/uniprot/P09041 P09041]
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** [http://www.uniprot.org/uniprot/P07205 P07205]
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** [http://www.uniprot.org/uniprot/P16617 P16617]
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** [http://www.uniprot.org/uniprot/Q37743 Q37743]
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** [http://www.uniprot.org/uniprot/Q58058 Q58058]
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** [http://www.uniprot.org/uniprot/P56154 P56154]
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** [http://www.uniprot.org/uniprot/O29119 O29119]
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** [http://www.uniprot.org/uniprot/Q01655 Q01655]
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** [http://www.uniprot.org/uniprot/Q9URB3 Q9URB3]
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** [http://www.uniprot.org/uniprot/P47542 P47542]
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** [http://www.uniprot.org/uniprot/O27121 O27121]
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** [http://www.uniprot.org/uniprot/Q9PMQ5 Q9PMQ5]
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** [http://www.uniprot.org/uniprot/P40924 P40924]
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** [http://www.uniprot.org/uniprot/P43726 P43726]
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** [http://www.uniprot.org/uniprot/O66519 O66519]
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** [http://www.uniprot.org/uniprot/Q9JWS8 Q9JWS8]
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** [http://www.uniprot.org/uniprot/Q9CIW1 Q9CIW1]
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** [http://www.uniprot.org/uniprot/P36204 P36204]
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** [http://www.uniprot.org/uniprot/Q59181 Q59181]
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** [http://www.uniprot.org/uniprot/P50319 P50319]
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** [http://www.uniprot.org/uniprot/P50310 P50310]
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** [http://www.uniprot.org/uniprot/P51903 P51903]
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** [http://www.uniprot.org/uniprot/P18912 P18912]
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** [http://www.uniprot.org/uniprot/P41757 P41757]
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** [http://www.uniprot.org/uniprot/P27362 P27362]
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** [http://www.uniprot.org/uniprot/P24269 P24269]
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** [http://www.uniprot.org/uniprot/P00560 P00560]
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** [http://www.uniprot.org/uniprot/P25055 P25055]
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** [http://www.uniprot.org/uniprot/Q01604 Q01604]
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** [http://www.uniprot.org/uniprot/P00558 P00558]
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** [http://www.uniprot.org/uniprot/P07377 P07377]
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** [http://www.uniprot.org/uniprot/P07378 P07378]
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** [http://www.uniprot.org/uniprot/P14828 P14828]
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** [http://www.uniprot.org/uniprot/P09404 P09404]
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** [http://www.uniprot.org/uniprot/P29408 P29408]
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** [http://www.uniprot.org/uniprot/P20972 P20972]
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** [http://www.uniprot.org/uniprot/P20971 P20971]
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** [http://www.uniprot.org/uniprot/P24590 P24590]
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** [http://www.uniprot.org/uniprot/P29409 P29409]
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** [http://www.uniprot.org/uniprot/P33161 P33161]
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** [http://www.uniprot.org/uniprot/P29405 P29405]
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** [http://www.uniprot.org/uniprot/P50317 P50317]
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** [http://www.uniprot.org/uniprot/P50315 P50315]
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** [http://www.uniprot.org/uniprot/P29407 P29407]
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** [http://www.uniprot.org/uniprot/P61884 P61884]
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** [http://www.uniprot.org/uniprot/Q42542 Q42542]
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** [http://www.uniprot.org/uniprot/P50318 P50318]
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** [http://www.uniprot.org/uniprot/P46712 P46712]
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** [http://www.uniprot.org/uniprot/P78018 P78018]
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** [http://www.uniprot.org/uniprot/Q49073 Q49073]
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** [http://www.uniprot.org/uniprot/Q42961 Q42961]
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** [http://www.uniprot.org/uniprot/Q42962 Q42962]
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** [http://www.uniprot.org/uniprot/O81394 O81394]
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** [http://www.uniprot.org/uniprot/P41758 P41758]
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** [http://www.uniprot.org/uniprot/O32756 O32756]
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** [http://www.uniprot.org/uniprot/P38667 P38667]
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** [http://www.uniprot.org/uniprot/P08966 P08966]
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** [http://www.uniprot.org/uniprot/P08967 P08967]
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** [http://www.uniprot.org/uniprot/P0A799 P0A799]
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** [http://www.uniprot.org/uniprot/P09188 P09188]
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** [http://www.uniprot.org/uniprot/P14228 P14228]
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** [http://www.uniprot.org/uniprot/P08891 P08891]
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** [http://www.uniprot.org/uniprot/P08892 P08892]
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** [http://www.uniprot.org/uniprot/P08893 P08893]
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** [http://www.uniprot.org/uniprot/P12782 P12782]
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** [http://www.uniprot.org/uniprot/P12783 P12783]
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{{#set: direction=REVERSIBLE}}
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−
{{#set: common name=phosphoglycerate_chloroplastic}}
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{{#set: common name=phosphoglycerate_kinase}}
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{{#set: ec number=EC-2.7.2.3}}
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−
{{#set: gene associated=Tiso_gene_3526|Tiso_gene_18264|Tiso_gene_3527|Tiso_gene_18263|Tiso_gene_12104|Tiso_gene_14642}}
+
−
{{#set: in pathway=PWY-1042|PWY66-399|GLUCONEO-PWY|SUCSYN-PWY|PWY-6901|P124-PWY|GLYCOLYSIS|PWY-6886|CALVIN-PWY|ANAGLYCOLYSIS-PWY|P122-PWY|P185-PWY|PWY-5484|PWY-7003}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
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−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:47, 21 March 2018

Pathway PWY-7124

  • taxonomic range:
  • common name:
    • ethylene biosynthesis V (engineered)
  • Synonym(s):

Reaction(s) found

7 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7124&oldid=43769"