Difference between revisions of "PWY-7141"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.4-RXN 1.3.7.4-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
(Created page with "Category:Gene == Gene Tiso_gene_5307 == * left end position: ** 9868 * transcription direction: ** NEGATIVE * right end position: ** 11593 * centisome position: ** 72.1872...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.4-RXN 1.3.7.4-RXN] ==
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== Gene Tiso_gene_5307 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 9868
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.3.7.4 EC-1.3.7.4]
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** NEGATIVE
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* right end position:
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** 11593
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* centisome position:
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** 72.18727   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[3.6.3.50-RXN]]
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** 1 [[BILIVERDINE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[3Z-PHYTOCHROMOBILIN]][c]
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** [[pantograph]]-[[esiliculosus]]
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* With common name(s):
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* [[ATPASE-RXN]]
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** 1 biliverdin-IX-α[c] '''+''' 2 H+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 (3Z)-phytochromobilin[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17350]]
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** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
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* [[ATPSYN-RXN]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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== Pathways associated ==
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* [[PWY-7170]], phytochromobilin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7170 PWY-7170]
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* [[PWY-7219]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=9868}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03678 R03678]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=11593}}
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{{#set: ec number=EC-1.3.7.4}}
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{{#set: centisome position=72.18727    }}
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{{#set: gene associated=Tiso_gene_17350}}
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{{#set: reaction associated=3.6.3.50-RXN|ATPASE-RXN|ATPSYN-RXN}}
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{{#set: in pathway=PWY-7170}}
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{{#set: pathway associated=PWY-7219}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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Revision as of 16:38, 10 January 2018

Gene Tiso_gene_5307

  • left end position:
    • 9868
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 11593
  • centisome position:
    • 72.18727
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7141&oldid=9849"