Difference between revisions of "PWY-7204"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12400 RXN-12400] == * direction: ** LEFT-TO-RIGHT * common name: ** xyloglucan XLLG oligosaccha...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12400 RXN-12400] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
−
** xyloglucan XLLG oligosaccharide β-galactosidase
+
** pyridoxal 5'-phosphate salvage II (plants)
−
** glycoside_hydrolase
+
−
** polyprotein
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** vitamin B6 salvage (plants)
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''8''' reactions found over '''9''' reactions in the full pathway
−
** 1 [[CPD-13378]][c] '''+''' 2 [[WATER]][c] '''=>''' 2 [[D-galactopyranose]][c] '''+''' 1 [[CPD-13375]][c]
+
* [[3.1.3.74-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 XLLG xyloglucan oligosaccharide[c] '''+''' 2 H2O[c] '''=>''' 2 D-galactopyranose[c] '''+''' 1 XXXG xyloglucan oligosaccharide[c]
+
*** [[Tiso_gene_18054]]
−
 
+
** 1 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-creinhardtii]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[PMPOXI-RXN]]
−
* Gene: [[Tiso_gene_1398]]
+
** 1 associated gene(s):
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[Tiso_gene_1471]]
−
*** Assignment: EC-NUMBER
+
** 2 reconstruction source(s) associated:
−
** Source: [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_12839]]
+
*** [[orthology-esiliculosus]]
−
** Source: [[annotation-in-silico_annotation]]
+
* [[PNKIN-RXN]]
−
*** Assignment: EC-NUMBER
+
** 1 associated gene(s):
−
* Gene: [[Tiso_gene_17558]]
+
*** [[Tiso_gene_6106]]
−
** Source: [[annotation-in-silico_annotation]]
+
** 4 reconstruction source(s) associated:
−
*** Assignment: EC-NUMBER
+
*** [[annotation-in-silico_annotation]]
−
== Pathways  ==
+
*** [[orthology-athaliana]]
−
* [[PWY-6807]], xyloglucan degradation II (exoglucanase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6807 PWY-6807]
+
*** [[orthology-creinhardtii]]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
*** [[orthology-esiliculosus]]
−
== Reconstruction information  ==
+
* [[PNPOXI-RXN]]
−
* Category: [[orthology]]
+
** 1 associated gene(s):
−
** Source: [[orthology-esiliculosus]]
+
*** [[Tiso_gene_1471]]
−
*** Tool: [[pantograph]]
+
** 2 reconstruction source(s) associated:
−
* Category: [[annotation]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[orthology-esiliculosus]]
−
*** Tool: [[pathwaytools]]
+
* [[PYRAMKIN-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_6106]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[orthology-esiliculosus]]
 +
* [[PYRIDOXINE-4-DEHYDROGENASE-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_18748]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
* [[PYRIDOXKIN-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_6106]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-14181]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_18054]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14046 RXN-14046]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: taxonomic range=TAX-33090}}
−
{{#set: common name=xyloglucan XLLG oligosaccharide β-galactosidase}}
+
{{#set: common name=pyridoxal 5'-phosphate salvage II (plants)}}
−
{{#set: common name=glycoside_hydrolase}}
+
{{#set: common name=vitamin B6 salvage (plants)}}
−
{{#set: common name=polyprotein}}
+
{{#set: reaction found=8}}
−
{{#set: ec number=EC-3.2.1.23}}
+
{{#set: total reaction=9}}
−
{{#set: gene associated=Tiso_gene_1398|Tiso_gene_12839|Tiso_gene_17558}}
+
{{#set: completion rate=89.0}}
−
{{#set: in pathway=PWY-6807}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:11, 21 March 2018

Pathway PWY-7204

  • taxonomic range:
  • common name:
    • pyridoxal 5'-phosphate salvage II (plants)
  • Synonym(s):
    • vitamin B6 salvage (plants)

Reaction(s) found

8 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7204&oldid=39982"