Difference between revisions of "PWY-7388"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7664 RXN-7664] == * direction: ** LEFT-TO-RIGHT * common name: ** geranylgeranyl_diphosphate_re...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7664 RXN-7664] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** geranylgeranyl_diphosphate_reductase
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** L-lysine biosynthesis III
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''7''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[CPD-7005]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[CPD-7004]][c] '''+''' 1 [[NADP]][c]
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* [[ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H+[c] '''+''' 1 geranylgeranyl chlorophyll a[c] '''+''' 1 NADPH[c] '''=>''' 1 dihydrogeranylgeranyl chlorophyll a[c] '''+''' 1 NADP+[c]
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*** [[Tiso_gene_18603]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_2613]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-synechocystis]]
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** EXPERIMENTAL_ANNOTATION
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*** [[manual-primary_network]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-creinhardtii]]
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== Pathways  ==
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* [[ASPARTATEKIN-RXN]]
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* [[PWY-5064]], chlorophyll a biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5064 PWY-5064]
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** 4 associated gene(s):
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[Tiso_gene_4345]]
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== Reconstruction information  ==
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*** [[Tiso_gene_17057]]
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* Category: [[annotation]]
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*** [[Tiso_gene_13809]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_16097]]
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*** Tool: [[pathwaytools]]
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** 7 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[DIAMINOPIMDECARB-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_10737]]
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*** [[Tiso_gene_12041]]
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** 6 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[DIHYDRODIPICSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14829]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-14014]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13314]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN-4821]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMELATE-DEHYDROGENASE-RXN DIAMINOPIMELATE-DEHYDROGENASE-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=geranylgeranyl_diphosphate_reductase}}
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{{#set: common name=L-lysine biosynthesis III}}
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{{#set: gene associated=Tiso_gene_2613}}
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{{#set: reaction found=6}}
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{{#set: in pathway=PWY-5064}}
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{{#set: total reaction=7}}
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{{#set: reconstruction category=annotation}}
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{{#set: completion rate=86.0}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 16:15, 21 March 2018

Pathway PWY-2942

  • taxonomic range:
  • common name:
    • L-lysine biosynthesis III
  • Synonym(s):

Reaction(s) found

6 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7388&oldid=33122"