Difference between revisions of "PWY-7388"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7664 RXN-7664] == * direction: ** LEFT-TO-RIGHT * common name: ** geranylgeranyl_diphosphate_re...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7664 RXN-7664] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
−
** geranylgeranyl_diphosphate_reductase
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** octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
 
* Synonym(s):
 
* Synonym(s):
 +
** octanoyl-ACP biosynthesis (mitochondria, yeast)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''9''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[CPD-7005]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[CPD-7004]][c] '''+''' 1 [[NADP]][c]
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* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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* With common name(s):
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** 9 associated gene(s):
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** 1 H+[c] '''+''' 1 geranylgeranyl chlorophyll a[c] '''+''' 1 NADPH[c] '''=>''' 1 dihydrogeranylgeranyl chlorophyll a[c] '''+''' 1 NADP+[c]
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*** [[Tiso_gene_5939]]
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*** [[Tiso_gene_500]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_14485]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13394]]
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* [[Tiso_gene_2613]]
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*** [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_15991]]
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***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_135]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_19302]]
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***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_10876]]
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== Pathways  ==
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** 6 reconstruction source(s) associated:
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* [[PWY-5064]], chlorophyll a biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5064 PWY-5064]
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*** [[annotation-experimental_annotation]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* Category: [[annotation]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pathwaytools]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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* [[4.2.1.58-RXN]]
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*** Tool: [[pathwaytools]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_6884]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_135]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_2812]]
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*** [[Tiso_gene_3800]]
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*** [[Tiso_gene_5029]]
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*** [[Tiso_gene_7965]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-esiliculosus]]
 +
* [[MALONYL-COA-ACP-TRANSACYL-RXN]]
 +
** 7 associated gene(s):
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_19309]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_18460]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_13394]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-14972]]
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** 0 associated gene:
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-14973]]
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** 0 associated gene:
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-9514]]
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** 10 associated gene(s):
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_16579]]
 +
*** [[Tiso_gene_136]]
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*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_500]]
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*** [[Tiso_gene_13083]]
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_9885]]
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*** [[Tiso_gene_10415]]
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*** [[Tiso_gene_624]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9515]]
 +
** 5 associated gene(s):
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_500]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-9516]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_5939]]
 +
*** [[Tiso_gene_14485]]
 +
*** [[Tiso_gene_15991]]
 +
*** [[Tiso_gene_19302]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: common name=geranylgeranyl_diphosphate_reductase}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: gene associated=Tiso_gene_2613}}
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{{#set: common name=octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)}}
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{{#set: in pathway=PWY-5064}}
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{{#set: common name=octanoyl-ACP biosynthesis (mitochondria, yeast)}}
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{{#set: reconstruction category=annotation}}
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{{#set: reaction found=9}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: total reaction=9}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: completion rate=100.0}}

Latest revision as of 20:36, 21 March 2018

Pathway PWY-7388

  • taxonomic range:
  • common name:
    • octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
  • Synonym(s):
    • octanoyl-ACP biosynthesis (mitochondria, yeast)

Reaction(s) found

9 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

"octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7388&oldid=42637"