Difference between revisions of "PWY-7560"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN] == * direction: ** REVERSI...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5794 TAX-57...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5794 TAX-5794]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** ORF
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** methylerythritol phosphate pathway II
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** aldose_1-epimerase-like_enzyme
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* ec number:
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** [http://enzyme.expasy.org/EC/5.1.3.15 EC-5.1.3.15]
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* Synonym(s):
 
* Synonym(s):
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** nonmevalonate isopentenyl diphosphate biosynthesis
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** methylerythritol phosphate degradation
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** MEP degradation
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** deoxyxylulose phosphate pathway
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** DOXP pathway
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** Rohmer pathway
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** isopentenyl diphosphate biosynthesis -- mevalonate-independent
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** nonmevalonate isoprenoid pathway
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** MEP pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''9''' reactions in the full pathway
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** 1 [[ALPHA-GLC-6-P]][c] '''<=>''' 1 [[GLC-6-P]][c]
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* [[2.7.1.148-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 &alpha;-D-glucose 6-phosphate[c] '''<=>''' 1 &beta;-D-glucose 6-phosphate[c]
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*** [[Tiso_gene_13463]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_17734]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_14633]]
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*** [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: EC-NUMBER
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-experimental_annotation]]
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* [[2.7.7.60-RXN]]
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*** Assignment: EC-NUMBER
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** 1 associated gene(s):
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_17568]]
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* Gene: [[Tiso_gene_19480]]
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** 6 reconstruction source(s) associated:
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** Source: [[orthology-creinhardtii]]
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_15139]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: EC-NUMBER
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*** [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* [[DXPREDISOM-RXN]]
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== Pathways  ==
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_15169]]
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* Category: [[orthology]]
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** 7 reconstruction source(s) associated:
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** Source: [[orthology-creinhardtii]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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* Category: [[manual]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[manual-primary_network]]
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*** [[orthology-athaliana]]
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* Category: [[annotation]]
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*** [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-experimental_annotation]]
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* [[DXS-RXN]]
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*** Tool: [[pathwaytools]]
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** 1 associated gene(s):
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*** [[Tiso_gene_17311]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[IPPISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_8653]]
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** 2 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[ISPH2-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5609]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[RXN0-302]]
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** 1 associated gene(s):
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*** [[Tiso_gene_9642]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN0-882]]
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** 1 associated gene(s):
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*** [[Tiso_gene_15758]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-884]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5609]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-5794}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16249 16249]
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{{#set: taxonomic range=TAX-1117}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02739 R02739]
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{{#set: common name=methylerythritol phosphate pathway II}}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=nonmevalonate isopentenyl diphosphate biosynthesis|methylerythritol phosphate degradation|MEP degradation|deoxyxylulose phosphate pathway|DOXP pathway|Rohmer pathway|isopentenyl diphosphate biosynthesis -- mevalonate-independent|nonmevalonate isoprenoid pathway|MEP pathway}}
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{{#set: common name=ORF}}
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{{#set: reaction found=9}}
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{{#set: common name=aldose_1-epimerase-like_enzyme}}
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{{#set: total reaction=9}}
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{{#set: ec number=EC-5.1.3.15}}
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{{#set: completion rate=100.0}}
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{{#set: gene associated=Tiso_gene_17734|Tiso_gene_14633|Tiso_gene_19480|Tiso_gene_15139}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|orthology-creinhardtii|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:07, 21 March 2018

Pathway PWY-7560

  • taxonomic range:
  • common name:
    • methylerythritol phosphate pathway II
  • Synonym(s):
    • nonmevalonate isopentenyl diphosphate biosynthesis
    • methylerythritol phosphate degradation
    • MEP degradation
    • deoxyxylulose phosphate pathway
    • DOXP pathway
    • Rohmer pathway
    • isopentenyl diphosphate biosynthesis -- mevalonate-independent
    • nonmevalonate isoprenoid pathway
    • MEP pathway

Reaction(s) found

9 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7560&oldid=39594"