Difference between revisions of "PWY-7664"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] == * direction: ** LEFT-TO-R...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
+
** oleate biosynthesis IV (anaerobic)
−
** propionyl-_carboxylase_alpha_chain
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/6.4.1.4 EC-6.4.1.4]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** cis-7-hexadecenoate biosynthesis
 +
** cis-9-octadecenoate biosynthesis
 +
** (7Z)-hexadec-7-enoate biosynthesis
 +
** (9Z)-octadec-9-enoate biosynthesis
 +
** (7Z)-hexadecenoate biosynthesis
 +
** (9Z)-octadecenoate biosynthesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''10''' reactions found over '''14''' reactions in the full pathway
−
** 1 [[ATP]][c] '''+''' 1 [[3-METHYL-CROTONYL-COA]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[TRANS-3-METHYL-GLUTACONYL-COA]][c] '''+''' 1 [[PROTON]][c]
+
* [[RXN-16615]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 ATP[c] '''+''' 1 3-methylcrotonyl-CoA[c] '''+''' 1 hydrogencarbonate[c] '''=>''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 3-methylglutaconyl-CoA[c] '''+''' 1 H+[c]
+
*** [[Tiso_gene_5939]]
−
 
+
** 2 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[annotation-experimental_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_10675]]
+
* [[RXN-16616]]
−
** IN-SILICO_ANNOTATION
+
** 2 associated gene(s):
−
***AUTOMATED-NAME-MATCH
+
*** [[Tiso_gene_9885]]
−
* [[Tiso_gene_5029]]
+
*** [[Tiso_gene_13083]]
−
** IN-SILICO_ANNOTATION
+
** 2 reconstruction source(s) associated:
−
***EC-NUMBER
+
*** [[annotation-experimental_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
* [[RXN-16619]]
−
** [[pantograph]]-[[creinhardtii]]
+
** 1 associated gene(s):
−
* [[Tiso_gene_14499]]
+
*** [[Tiso_gene_6884]]
−
** EXPERIMENTAL_ANNOTATION
+
** 1 reconstruction source(s) associated:
−
***EC-NUMBER
+
*** [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
* [[RXN-16621]]
−
** [[pantograph]]-[[creinhardtii]]
+
** 1 associated gene(s):
−
== Pathways  ==
+
*** [[Tiso_gene_5939]]
−
* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY]
+
** 2 reconstruction source(s) associated:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
*** [[annotation-in-silico_annotation]]
−
== Reconstruction information  ==
+
*** [[annotation-experimental_annotation]]
−
* [[orthology]]:
+
* [[RXN-16622]]
−
** [[pantograph]]:
+
** 2 associated gene(s):
−
*** [[creinhardtii]]
+
*** [[Tiso_gene_9885]]
−
*** [[athaliana]]
+
*** [[Tiso_gene_13083]]
−
* [[annotation]]:
+
** 2 reconstruction source(s) associated:
−
** [[pathwaytools]]:
+
*** [[annotation-in-silico_annotation]]
−
*** [[experimental_annotation]]
+
*** [[annotation-experimental_annotation]]
−
*** [[in-silico_annotation]]
+
* [[RXN-16623]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_6884]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-16625]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_5939]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-16626]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_9885]]
 +
*** [[Tiso_gene_13083]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-16627]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_6884]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-9533]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_6884]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16614 RXN-16614]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16620 RXN-16620]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16624 RXN-16624]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16628 RXN-16628]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13589 13589]
+
{{#set: common name=oleate biosynthesis IV (anaerobic)}}
−
* LIGAND-RXN:
+
{{#set: common name=cis-7-hexadecenoate biosynthesis|cis-9-octadecenoate biosynthesis|(7Z)-hexadec-7-enoate biosynthesis|(9Z)-octadec-9-enoate biosynthesis|(7Z)-hexadecenoate biosynthesis|(9Z)-octadecenoate biosynthesis}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138]
+
{{#set: reaction found=10}}
−
* UNIPROT:
+
{{#set: total reaction=14}}
−
** [http://www.uniprot.org/uniprot/Q40121 Q40121]
+
{{#set: completion rate=71.0}}
−
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial}}
+
−
{{#set: common name=propionyl-_carboxylase_alpha_chain}}
+
−
{{#set: ec number=EC-6.4.1.4}}
+
−
{{#set: gene associated=Tiso_gene_10675|Tiso_gene_5029|Tiso_gene_14499}}
+
−
{{#set: in pathway=LEU-DEG2-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|athaliana}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:46, 21 March 2018

Pathway PWY-7664

  • taxonomic range:
  • common name:
    • oleate biosynthesis IV (anaerobic)
  • Synonym(s):
    • cis-7-hexadecenoate biosynthesis
    • cis-9-octadecenoate biosynthesis
    • (7Z)-hexadec-7-enoate biosynthesis
    • (9Z)-octadec-9-enoate biosynthesis
    • (7Z)-hexadecenoate biosynthesis
    • (9Z)-octadecenoate biosynthesis

Reaction(s) found

10 reactions found over 14 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7664&oldid=43697"