Difference between revisions of "PWY66-398"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16017 RXN-16017] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16017 RXN-16017] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
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** TCA cycle III (animals)
 
* Synonym(s):
 
* Synonym(s):
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** tricarboxylic acid cycle
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** citric acid cycle
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** Szent-Gyorgyi-Krebs cycle
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** Krebs cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''11''' reactions in the full pathway
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** 10 [[MALONYL-COA]][c] '''+''' 23 [[PROTON]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 14 [[NADPH]][c] '''=>''' 14 [[NADP]][c] '''+''' 9 [[WATER]][c] '''+''' 1 [[CPD-10244]][c] '''+''' 10 [[CARBON-DIOXIDE]][c] '''+''' 11 [[CO-A]][c]
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* [[2OXOGLUTDECARB-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 10 malonyl-CoA[c] '''+''' 23 H+[c] '''+''' 1 acetyl-CoA[c] '''+''' 14 NADPH[c] '''=>''' 14 NADP+[c] '''+''' 9 H2O[c] '''+''' 1 docosahexaenoate[c] '''+''' 10 CO2[c] '''+''' 11 coenzyme A[c]
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*** [[Tiso_gene_10209]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[manual-primary_network]]
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* [[PWY-7585]], docosahexaenoate biosynthesis II (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7585 PWY-7585]
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*** [[annotation-experimental_annotation]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[ACONITATEDEHYDR-RXN]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* Category: [[gap-filling]]
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*** [[Tiso_gene_13007]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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** 3 reconstruction source(s) associated:
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*** Tool: [[meneco]]
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*** [[annotation-experimental_annotation]]
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**** Comment: [[added for gapfilling]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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* [[ACONITATEHYDR-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13007]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[CITSYN-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18030]]
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*** [[Tiso_gene_9601]]
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*** [[Tiso_gene_9603]]
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*** [[Tiso_gene_9602]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3691]]
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*** [[Tiso_gene_6720]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_2323]]
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*** [[Tiso_gene_1990]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN0-1147]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_15846]]
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*** [[Tiso_gene_11866]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_11866]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=ISOCITRATE-DEHYDROGENASE-NAD+-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33208}}
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{{#set: ec number=EC-2.3.1}}
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{{#set: common name=TCA cycle III (animals)}}
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{{#set: in pathway=PWY-7585}}
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{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reaction found=10}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
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{{#set: total reaction=11}}
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{{#set: reconstruction tool=meneco}}
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{{#set: completion rate=91.0}}
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{{#set: reconstruction comment=added for gapfilling}}
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Latest revision as of 20:47, 21 March 2018

Pathway PWY66-398

  • taxonomic range:
  • common name:
    • TCA cycle III (animals)
  • Synonym(s):
    • tricarboxylic acid cycle
    • citric acid cycle
    • Szent-Gyorgyi-Krebs cycle
    • Krebs cycle

Reaction(s) found

10 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY66-398&oldid=43715"