Difference between revisions of "Pathwaytools"

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(Created page with "{{#ask: Category:Reaction reconstruction source::in-silico_annotation | ?COMMON NAME | ?ec number | ?reconstruction category | ?reconstruction tool | ?reconstruction s...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGSUCCINLYA-RXN ARGSUCCINLYA-RXN] == * direction: ** REVERSIBLE * common name: ** argininosuccinat...")
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{{#ask: [[Category:Reaction]] [[reconstruction source::in-silico_annotation]]
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[[Category:Reaction]]
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| ?COMMON NAME
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGSUCCINLYA-RXN ARGSUCCINLYA-RXN] ==
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| ?ec number
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* direction:
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| ?reconstruction category
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** REVERSIBLE
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| ?reconstruction tool
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* common name:
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| ?reconstruction source
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** argininosuccinate_lyase
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| ?gene associated
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* ec number:
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| ?in pathway
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** [http://enzyme.expasy.org/EC/4.3.2.1 EC-4.3.2.1]
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}}
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* Synonym(s):
 +
 
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== Reaction Formula ==
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* With identifiers:
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** 1 [[L-ARGININO-SUCCINATE]][c] '''<=>''' 1 [[ARG]][c] '''+''' 1 [[FUM]][c]
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* With common name(s):
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** 1 L-arginino-succinate[c] '''<=>''' 1 L-arginine[c] '''+''' 1 fumarate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_2485]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-4983]], L-citrulline-nitric oxide cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4983 PWY-4983]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24020 24020]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01086 R01086]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P50987 P50987]
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** [http://www.uniprot.org/uniprot/Q46104 Q46104]
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** [http://www.uniprot.org/uniprot/P11447 P11447]
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** [http://www.uniprot.org/uniprot/Q9JVG7 Q9JVG7]
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** [http://www.uniprot.org/uniprot/Q9CJ76 Q9CJ76]
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** [http://www.uniprot.org/uniprot/P44314 P44314]
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** [http://www.uniprot.org/uniprot/Q58201 Q58201]
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** [http://www.uniprot.org/uniprot/P33110 P33110]
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** [http://www.uniprot.org/uniprot/Q01592 Q01592]
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** [http://www.uniprot.org/uniprot/P40369 P40369]
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** [http://www.uniprot.org/uniprot/P50988 P50988]
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** [http://www.uniprot.org/uniprot/P73257 P73257]
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** [http://www.uniprot.org/uniprot/P50514 P50514]
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** [http://www.uniprot.org/uniprot/P04076 P04076]
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** [http://www.uniprot.org/uniprot/P04424 P04424]
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** [http://www.uniprot.org/uniprot/P20673 P20673]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=argininosuccinate_lyase}}
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{{#set: ec number=EC-4.3.2.1}}
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{{#set: gene associated=Tiso_gene_2485}}
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{{#set: in pathway=PWY-5154|ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4983|PWY-7400}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 01:18, 19 March 2018

Reaction ARGSUCCINLYA-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • argininosuccinate_lyase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-arginino-succinate[c] <=> 1 L-arginine[c] + 1 fumarate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline): PWY-5154
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-4983, L-citrulline-nitric oxide cycle: PWY-4983
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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