Difference between revisions of "Pi"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12932 CPD-12932] == * smiles: ** CC(C)=CC=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRIBFAICARPISOM-RXN PRIBFAICARPISOM-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phospho...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12932 CPD-12932] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRIBFAICARPISOM-RXN PRIBFAICARPISOM-RXN] ==
−
* smiles:
+
* direction:
−
** CC(C)=CC=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCC=C(C)C
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=OCMSUPSDVXKDFY-FQMRBFJQSA-N
+
 
* common name:
 
* common name:
−
** all-trans-3,4-didehydrolycopene
+
** phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase
−
* molecular weight:
+
* ec number:
−
** 534.867   
+
** [http://enzyme.expasy.org/EC/5.3.1.16 EC-5.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
−
** 3,4-dehydrolycopene
 
−
** 3,4-didehydrolycopene
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-11999]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide[c] '''=>''' 1 phosphoribulosylformimino-AICAR-phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_1565]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_11199]]
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways  ==
 +
* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=16061227 16061227]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15469 15469]
−
* CHEMSPIDER:
+
* LIGAND-RXN:
−
** [http://www.chemspider.com/Chemical-Structure.17220904.html 17220904]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04640 R04640]
−
* CHEBI:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=62474 62474]
+
** [http://www.uniprot.org/uniprot/Q02131 Q02131]
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/Q9JVH4 Q9JVH4]
−
** [http://www.genome.jp/dbget-bin/www_bget?C15867 C15867]
+
** [http://www.uniprot.org/uniprot/Q9PM74 Q9PM74]
−
{{#set: smiles=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCC=C(C)C}}
+
** [http://www.uniprot.org/uniprot/P44435 P44435]
−
{{#set: inchi key=InChIKey=OCMSUPSDVXKDFY-FQMRBFJQSA-N}}
+
** [http://www.uniprot.org/uniprot/P10372 P10372]
−
{{#set: common name=all-trans-3,4-didehydrolycopene}}
+
** [http://www.uniprot.org/uniprot/P10371 P10371]
−
{{#set: molecular weight=534.867    }}
+
** [http://www.uniprot.org/uniprot/P16250 P16250]
−
{{#set: common name=3,4-dehydrolycopene|3,4-didehydrolycopene}}
+
** [http://www.uniprot.org/uniprot/P05324 P05324]
−
{{#set: consumed by=RXN-11999}}
+
** [http://www.uniprot.org/uniprot/P26720 P26720]
 +
** [http://www.uniprot.org/uniprot/P50936 P50936]
 +
** [http://www.uniprot.org/uniprot/P74561 P74561]
 +
** [http://www.uniprot.org/uniprot/O82782 O82782]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase}}
 +
{{#set: ec number=EC-5.3.1.16}}
 +
{{#set: gene associated=Tiso_gene_1565|Tiso_gene_11199}}
 +
{{#set: in pathway=HISTSYN-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:55, 21 March 2018

Reaction PRIBFAICARPISOM-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Pi&oldid=37329"