Difference between revisions of "R223-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** octanoyl-CoA ligase ** polyke...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** L-homoserine biosynthesis
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** octanoyl-CoA ligase
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** polyketide_synthase
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** ORF
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** long_chain_acyl-_synthetase
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** acyl-_synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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** 1 [[CPD-195]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-196]][c] '''+''' 1 [[AMP]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_18603]]
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** 1 octanoate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 octanoyl-CoA[c] '''+''' 1 AMP[c]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_348]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[manual-primary_network]]
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-creinhardtii]]
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*** Assignment: EC-NUMBER
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* [[ASPARTATEKIN-RXN]]
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* Gene: [[Tiso_gene_136]]
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** 4 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_4345]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_17057]]
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* Gene: [[Tiso_gene_10876]]
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*** [[Tiso_gene_13809]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_16097]]
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*** Assignment: EC-NUMBER
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** 7 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_13394]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_500]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[manual-primary_network]]
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* Gene: [[Tiso_gene_7855]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[HOMOSERDEHYDROG-RXN]]
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*** Assignment: EC-NUMBER
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** 3 associated gene(s):
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* Gene: [[Tiso_gene_4191]]
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*** [[Tiso_gene_5558]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_1148]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_4345]]
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** Source: [[annotation-experimental_annotation]]
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** 3 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[manual-primary_network]]
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* Gene: [[Tiso_gene_135]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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== Reaction(s) not found ==
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* Gene: [[Tiso_gene_9394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[P221-PWY]], octane oxidation: [http://metacyc.org/META/NEW-IMAGE?object=P221-PWY P221-PWY]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY]
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{{#set: common name=octanoyl-CoA ligase}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: common name=polyketide_synthase}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=ORF}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: common name=L-homoserine biosynthesis}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: reaction found=3}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: total reaction=3}}
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{{#set: gene associated=Tiso_gene_348|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_7855|Tiso_gene_4191|Tiso_gene_135|Tiso_gene_9394}}
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{{#set: completion rate=100.0}}
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{{#set: in pathway=PWY-6920|P221-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:27, 21 March 2018

Reaction R223-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • octanoyl-CoA ligase
    • polyketide_synthase
    • ORF
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 octanoate[c] + 1 ATP[c] + 1 coenzyme A[c] => 1 diphosphate[c] + 1 octanoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
    • 5 reactions found over 6 reactions in the full pathway
  • P221-PWY, octane oxidation: P221-PWY
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=R223-RXN&oldid=41676"