Difference between revisions of "R96"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R96 R96] == * direction: ** LEFT-TO-RIGHT * common name: ** R96 * Synonym(s): == Reaction Formula...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R96 R96] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** protoporphyrinogen_ix_oxidase_usually_abbreviated
+
** R96
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c]
+
** 1.0 [[NEUROSPORENE]][c] '''+''' 1.0 [[OXYGEN-MOLECULE]][c] '''+''' 1.0 [[NADPH]][c] '''+''' 1.0 [[PROTON]][c] '''=>''' 1.0 [[CPD1F-114]][c] '''+''' 1.0 [[NADP]][c] '''+''' 2.0 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 protoporphyrinogen IX[c] '''+''' 3 oxygen[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c]
+
** 1.0 all-trans neurosporene[c] '''+''' 1.0 oxygen[c] '''+''' 1.0 NADPH[c] '''+''' 1.0 H+[c] '''=>''' 1.0 all-trans-lycopene[c] '''+''' 1.0 NADP+[c] '''+''' 2.0 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_11986]]
+
* Gene: [[Tiso_gene_7142]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_15802]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_916]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_13369]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_16794]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_917]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_3092]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_16795]]
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
−
* Gene: [[Tiso_gene_15401]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P50336 P50336]
 
−
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
 
−
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
 
−
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
 
−
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
 
−
** [http://www.uniprot.org/uniprot/P51175 P51175]
 
−
** [http://www.uniprot.org/uniprot/O24163 O24163]
 
−
** [http://www.uniprot.org/uniprot/O24164 O24164]
 
−
** [http://www.uniprot.org/uniprot/O64384 O64384]
 
−
** [http://www.uniprot.org/uniprot/O64385 O64385]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=protoporphyrinogen_ix_oxidase_usually_abbreviated}}
+
{{#set: common name=R96}}
−
{{#set: ec number=EC-1.3.3.4}}
+
{{#set: gene associated=Tiso_gene_7142|Tiso_gene_15802|Tiso_gene_916|Tiso_gene_13369|Tiso_gene_16794|Tiso_gene_917|Tiso_gene_3092|Tiso_gene_16795}}
−
{{#set: gene associated=Tiso_gene_11986|Tiso_gene_15401}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction source=orthology-synechocystis}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:25, 21 March 2018

Reaction R96

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • R96
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 all-trans neurosporene[c] + 1.0 oxygen[c] + 1.0 NADPH[c] + 1.0 H+[c] => 1.0 all-trans-lycopene[c] + 1.0 NADP+[c] + 2.0 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=R96&oldid=48689"