Difference between revisions of "RME144"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.8.4.12-RXN 1.8.4.12-RXN] == * direction: ** REVERSIBLE * common name: ** peptide_methionine-r-sul...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.27-RXN 1.2.1.27-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** methylmalonate-semial...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.8.4.12-RXN 1.8.4.12-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.27-RXN 1.2.1.27-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** peptide_methionine-r-sulfoxide_reductase
+
** methylmalonate-semialdehyde_dehydrogenase
−
** ORF
+
−
** methionine_sulfoxide_reductase_with_associated_domain
+
−
** methionine_sulfoxide_reductase_b
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.8.4.12 EC-1.8.4.12]
+
** [http://enzyme.expasy.org/EC/1.2.1.27 EC-1.2.1.27]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[Protein-L-methionine]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''<=>''' 1 [[Protein-L-methionine-R-S-oxides]][c] '''+''' 1 [[Red-Thioredoxin]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[CPD-12179]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[PROPIONYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a [protein]-L-methionine[c] '''+''' 1 an oxidized thioredoxin[c] '''<=>''' 1 a protein-L-methionine-(R)-S-oxide[c] '''+''' 1 a reduced thioredoxin[c]
+
** 1 coenzyme A[c] '''+''' 1 methylmalonate semialdehyde[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 propanoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18058]]
+
* Gene: [[Tiso_gene_11323]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_16975]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_19578]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14455]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_6049]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5642]], 2,4-dinitrotoluene degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5642 PWY-5642]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24164 24164]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20804 20804]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07607 R07607]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00922 R00922]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: common name=peptide_methionine-r-sulfoxide_reductase}}
+
** [http://www.uniprot.org/uniprot/Q02253 Q02253]
−
{{#set: common name=ORF}}
+
** [http://www.uniprot.org/uniprot/Q07536 Q07536]
−
{{#set: common name=methionine_sulfoxide_reductase_with_associated_domain}}
+
** [http://www.uniprot.org/uniprot/P28810 P28810]
−
{{#set: common name=methionine_sulfoxide_reductase_b}}
+
** [http://www.uniprot.org/uniprot/O49218 O49218]
−
{{#set: ec number=EC-1.8.4.12}}
+
** [http://www.uniprot.org/uniprot/Q7KW39 Q7KW39]
−
{{#set: gene associated=Tiso_gene_18058|Tiso_gene_16975|Tiso_gene_19578|Tiso_gene_14455|Tiso_gene_6049}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=}}
+
{{#set: common name=methylmalonate-semialdehyde_dehydrogenase}}
 +
{{#set: ec number=EC-1.2.1.27}}
 +
{{#set: gene associated=Tiso_gene_11323}}
 +
{{#set: in pathway=PWY-5642}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:56, 21 March 2018

Reaction 1.2.1.27-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • methylmalonate-semialdehyde_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 methylmalonate semialdehyde[c] + 1 H2O[c] + 1 NAD+[c] => 1 H+[c] + 1 NADH[c] + 1 hydrogencarbonate[c] + 1 propanoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5642, 2,4-dinitrotoluene degradation: PWY-5642
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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