Difference between revisions of "RXN-10773"

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(Created page with "Category:Gene == Gene Tiso_gene_10754 == * left end position: ** 6623 * transcription direction: ** POSITIVE * right end position: ** 8149 * centisome position: ** 79.5746...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10773 RXN-10773] == * direction: ** LEFT-TO-RIGHT * common name: ** low_quality_protein:_beta-g...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_10754 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10773 RXN-10773] ==
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* left end position:
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* direction:
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** 6623
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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* right end position:
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** ORF
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** 8149
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** beta-glucosidase-like_chloroplastic
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* centisome position:
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** beta_glucosidase
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** 79.57468   
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN]]
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* With identifiers:
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** [[pantograph]]-[[synechocystis]]
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** 1 [[WATER]][c] '''+''' 1 [[CELLOBIOSE]][c] '''=>''' 2 [[Glucopyranose]][c]
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** [[pantograph]]-[[esiliculosus]]
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* With common name(s):
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* [[RXN0-5408]]
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** 1 H2O[c] '''+''' 1 β-D-cellobiose[c] '''=>''' 2 D-glucopyranose[c]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXNQT-4142]]
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== Genes associated with this reaction  ==
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** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***automated-name-match
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* Gene: [[Tiso_gene_10001]]
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== Pathways associated ==
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** Source: [[orthology-esiliculosus]]
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* [[PWY-4702]]
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* Gene: [[Tiso_gene_2344]]
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* [[PWY-2301]]
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** Source: [[orthology-esiliculosus]]
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* [[PWY-882]]
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* Gene: [[Tiso_gene_6497]]
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_6187]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2843]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5836]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6007]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_15067]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6188]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_8669]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13306]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13305]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_3467]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_15066]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways ==
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* [[PWY-6788]], cellulose degradation II (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6788 PWY-6788]
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** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=6623}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30682 30682]
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{{#set: right end position=8149}}
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* LIGAND-RXN:
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{{#set: centisome position=79.57468    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00026 R00026]
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{{#set: reaction associated=MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN|RXN0-5408|RXNQT-4142}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-4702|PWY-2301|PWY-882}}
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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{{#set: common name=ORF}}
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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{{#set: common name=beta_glucosidase}}
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{{#set: ec number=EC-3.2.1.21}}
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{{#set: gene associated=Tiso_gene_10001|Tiso_gene_2344|Tiso_gene_6497|Tiso_gene_6187|Tiso_gene_2843|Tiso_gene_5836|Tiso_gene_6007|Tiso_gene_15067|Tiso_gene_6188|Tiso_gene_8669|Tiso_gene_13306|Tiso_gene_13305|Tiso_gene_3467|Tiso_gene_15066}}
 +
{{#set: in pathway=PWY-6788}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:00, 21 March 2018

Reaction RXN-10773

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • ORF
    • beta-glucosidase-like_chloroplastic
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 β-D-cellobiose[c] => 2 D-glucopyranose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6788, cellulose degradation II (fungi): PWY-6788
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-10773&oldid=45169"