Difference between revisions of "RXN-11520"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-218 RXN3O-218] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** prolyl_4-hydroxylas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-218 RXN3O-218] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** prolyl_4-hydroxylase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.14.19.20 EC-1.14.19.20]
+
** [http://enzyme.expasy.org/EC/1.14.11.2 EC-1.14.11.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[PROTON]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[EPISTEROL]][c] '''=>''' 1 [[CPD-700]][c] '''+''' 2 [[WATER]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c]
+
** 1 [[PROCOLLAGEN-L-PROLINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6321]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 H+[c] '''+''' 2 a ferrocytochrome b5[c] '''+''' 1 oxygen[c] '''+''' 1 episterol[c] '''=>''' 1 ergosta-5,7,24(28)-trien-3β-ol[c] '''+''' 2 H2O[c] '''+''' 2 a ferricytochrome b5[c]
+
** 1 a [procollagen]-L-proline[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 a [procollagen] trans 4-hyroxy-L-proline[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5446]]
+
* [[Tiso_gene_17919]]
−
** [[pantograph]]-[[athaliana]]
+
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_4246]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_18689]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18933]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9035]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_3021]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13008]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9636]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_292]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9165]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_6296]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9227]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2158]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_16122]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18145]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9873]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9455]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_15328]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_19638]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18235]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1468]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2280]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17593]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_16842]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_15594]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17823]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18208]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_8652]]
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2541]], plant sterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541]
 
−
** '''10''' reactions found over '''36''' reactions in the full pathway
 
−
* [[PWY-6075]], ergosterol biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6075 PWY-6075]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[athaliana]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33463 33463]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07505 R07505]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03219 R03219]
−
** [http://www.genome.jp/dbget-bin/www_bget?R07491 R07491]
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P21195 P21195]
 +
** [http://www.uniprot.org/uniprot/Q10576 Q10576]
 +
** [http://www.uniprot.org/uniprot/P16924 P16924]
 +
** [http://www.uniprot.org/uniprot/P13674 P13674]
 +
** [http://www.uniprot.org/uniprot/P05307 P05307]
 +
** [http://www.uniprot.org/uniprot/P09102 P09102]
 +
** [http://www.uniprot.org/uniprot/P07237 P07237]
 +
** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
 +
** [http://www.uniprot.org/uniprot/P04785 P04785]
 +
** [http://www.uniprot.org/uniprot/P54001 P54001]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.14.19.20}}
+
{{#set: common name=prolyl_4-hydroxylase}}
−
{{#set: gene associated=Tiso_gene_5446}}
+
{{#set: common name=ORF}}
−
{{#set: in pathway=PWY-2541|PWY-6075}}
+
{{#set: ec number=EC-1.14.11.2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_17919|Tiso_gene_4246|Tiso_gene_18689|Tiso_gene_18933|Tiso_gene_9035|Tiso_gene_3021|Tiso_gene_13008|Tiso_gene_9636|Tiso_gene_292|Tiso_gene_9165|Tiso_gene_6296|Tiso_gene_9227|Tiso_gene_2158|Tiso_gene_16122|Tiso_gene_18145|Tiso_gene_9873|Tiso_gene_9455|Tiso_gene_15328|Tiso_gene_19638|Tiso_gene_18235|Tiso_gene_1468|Tiso_gene_2280|Tiso_gene_17593|Tiso_gene_16842|Tiso_gene_15594|Tiso_gene_17823|Tiso_gene_18208|Tiso_gene_8652}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction source=athaliana}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 19:24, 18 March 2018

Reaction 1.14.11.2-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • prolyl_4-hydroxylase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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