Difference between revisions of "RXN-11520"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** prolyl_4-hydroxylas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11520 RXN-11520] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11520 RXN-11520] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** prolyl_4-hydroxylase
 
−
** ORF
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.14.11.2 EC-1.14.11.2]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROCOLLAGEN-L-PROLINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6321]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[1-7-DIMETHYLXANTHINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-12483]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a [procollagen]-L-proline[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 a [procollagen] trans 4-hyroxy-L-proline[c]
+
** 1 H2O[c] '''+''' 1 paraxanthine[c] '''+''' 1 oxygen[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 1,7-dimethylurate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17919]]
+
* Gene: [[Tiso_gene_11775]]
−
** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_4246]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_18689]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18933]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9035]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3021]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13008]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9636]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_292]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9165]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6296]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9227]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2158]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16122]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18145]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9873]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9455]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15328]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_19638]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18235]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1468]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2280]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17593]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16842]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15594]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17823]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18208]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8652]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6632]], caffeine degradation IV (bacteria, via demethylation and oxidation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6632 PWY-6632]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[orthology-athaliana]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03219 R03219]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07977 R07977]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P21195 P21195]
+
−
** [http://www.uniprot.org/uniprot/Q10576 Q10576]
+
−
** [http://www.uniprot.org/uniprot/P16924 P16924]
+
−
** [http://www.uniprot.org/uniprot/P13674 P13674]
+
−
** [http://www.uniprot.org/uniprot/P05307 P05307]
+
−
** [http://www.uniprot.org/uniprot/P09102 P09102]
+
−
** [http://www.uniprot.org/uniprot/P07237 P07237]
+
−
** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
+
−
** [http://www.uniprot.org/uniprot/P04785 P04785]
+
−
** [http://www.uniprot.org/uniprot/P54001 P54001]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=prolyl_4-hydroxylase}}
+
{{#set: gene associated=Tiso_gene_11775}}
−
{{#set: common name=ORF}}
+
{{#set: in pathway=PWY-6632}}
−
{{#set: ec number=EC-1.14.11.2}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: gene associated=Tiso_gene_17919|Tiso_gene_4246|Tiso_gene_18689|Tiso_gene_18933|Tiso_gene_9035|Tiso_gene_3021|Tiso_gene_13008|Tiso_gene_9636|Tiso_gene_292|Tiso_gene_9165|Tiso_gene_6296|Tiso_gene_9227|Tiso_gene_2158|Tiso_gene_16122|Tiso_gene_18145|Tiso_gene_9873|Tiso_gene_9455|Tiso_gene_15328|Tiso_gene_19638|Tiso_gene_18235|Tiso_gene_1468|Tiso_gene_2280|Tiso_gene_17593|Tiso_gene_16842|Tiso_gene_15594|Tiso_gene_17823|Tiso_gene_18208|Tiso_gene_8652}}
+
{{#set: reconstruction source=orthology-athaliana}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:41, 21 March 2018

Reaction RXN-11520

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6632, caffeine degradation IV (bacteria, via demethylation and oxidation): PWY-6632
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11520&oldid=43208"