Difference between revisions of "RXN-12171"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] == * direction:...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FE+3 FE+3] == * smiles: ** [Fe+++] * inchi key: ** InChIKey=VTLYFUHAOXGGBS-UHFFFAOYSA-N * commo...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FE+3 FE+3] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** [Fe+++]
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* inchi key:
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** InChIKey=VTLYFUHAOXGGBS-UHFFFAOYSA-N
 
* common name:
 
* common name:
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** glutarate-semialdehyde_dehydrogenase
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** Fe3+
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/1.2.1.24 EC-1.2.1.24]
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** 55.847   
 
* Synonym(s):
 
* Synonym(s):
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** ferric iron
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** Fe+++
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** Fe+3
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** ferric ion
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** fe(iii)
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[TransportSeed_FE+3]]
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** 1 [[SUCC-S-ALD]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[SUC]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c]
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* [[RXN-14387]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 succinate semialdehyde[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 succinate[c] '''+''' 2 H+[c] '''+''' 1 NADH[c]
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* [[TransportSeed_FE+3]]
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* [[RXN-12540]]
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== Genes associated with this reaction  ==
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* [[RXN-12541]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) of unknown directionality ==
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* [[Tiso_gene_6952]]
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* [[ExchangeSeed_FE+3]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_91]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_777]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-6473]], 4-aminobutanoate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6473 PWY-6473]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6535]], 4-aminobutanoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6535 PWY-6535]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* METABOLIGHTS : MTBLC29034
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13217 13217]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=29936 29936]
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** [http://www.genome.jp/dbget-bin/www_bget?R00713 R00713]
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* HMDB : HMDB12943
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P51649 P51649]
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** [http://www.genome.jp/dbget-bin/www_bget?C14819 C14819]
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** [http://www.uniprot.org/uniprot/P51650 P51650]
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* CHEMSPIDER:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.chemspider.com/Chemical-Structure.27815.html 27815]
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{{#set: common name=glutarate-semialdehyde_dehydrogenase}}
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* CHEBI:
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{{#set: ec number=EC-1.2.1.24}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=29034 29034]
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{{#set: gene associated=Tiso_gene_6952|Tiso_gene_91|Tiso_gene_777}}
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* BIGG : fe3
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{{#set: in pathway=PWY-6473|PWY-6535|GLUDEG-I-PWY|PWY-4321}}
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{{#set: smiles=[Fe+++]}}
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{{#set: reconstruction category=orthology}}
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{{#set: inchi key=InChIKey=VTLYFUHAOXGGBS-UHFFFAOYSA-N}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: common name=Fe3+}}
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{{#set: reconstruction source=creinhardtii}}
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{{#set: molecular weight=55.847    }}
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{{#set: reconstruction category=annotation}}
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{{#set: common name=ferric iron|Fe+++|Fe+3|ferric ion|fe(iii)}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: consumed by=TransportSeed_FE+3|RXN-14387}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: produced by=TransportSeed_FE+3|RXN-12540|RXN-12541}}
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{{#set: consumed or produced by=ExchangeSeed_FE+3}}

Revision as of 18:07, 10 January 2018

Metabolite FE+3

  • smiles:
    • [Fe+++]
  • inchi key:
    • InChIKey=VTLYFUHAOXGGBS-UHFFFAOYSA-N
  • common name:
    • Fe3+
  • molecular weight:
    • 55.847
  • Synonym(s):
    • ferric iron
    • Fe+++
    • Fe+3
    • ferric ion
    • fe(iii)

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • METABOLIGHTS : MTBLC29034
  • PUBCHEM:
  • HMDB : HMDB12943
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • BIGG : fe3





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