Difference between revisions of "RXN-12252"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1803 RXN3O-1803] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase ** pol...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12252 RXN-12252] == * direction: ** LEFT-TO-RIGHT * common name: ** para-nitrobenzyl_esterase *...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1803 RXN3O-1803] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12252 RXN-12252] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-oxoacyl-synthase
+
** para-nitrobenzyl_esterase
−
** polyketide_synthase
+
** protein_chloroplastic
 +
** serine_esterase
 +
** alpha_beta_hydrolase_fold_protein
 +
** sialate_o-acetylesterase-like_protein
 +
** ORF
 +
** lysophospholipase
 +
** alpha_beta_hydrolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Palmitoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-stearoyl-ACPs]][c] '''+''' 1 [[ACP]][c]
+
** 1 [[CPD-13174]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13172]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-173]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a palmitoyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a 3-oxo-stearoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
+
** 1 salicyl-6-hydroxy-2-cyclohexene-on-oyl[c] '''+''' 1 H2O[c] '''=>''' 1 6-hydroxy-2-cyclohexen-one-carboxylate[c] '''+''' 1 H+[c] '''+''' 1 salicyl alcohol[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14485]]
+
* Gene: [[Tiso_gene_10066]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_4606]]
−
* [[Tiso_gene_15991]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_13394]]
+
* Gene: [[Tiso_gene_1538]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_11351]]
−
* [[Tiso_gene_500]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_17029]]
−
* [[Tiso_gene_136]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_19778]]
−
* [[Tiso_gene_19302]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
* Gene: [[Tiso_gene_16518]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_10876]]
+
* Gene: [[Tiso_gene_2556]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_5939]]
+
* Gene: [[Tiso_gene_12686]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_9429]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_135]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_1537]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1922]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4650]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
* Category: [[annotation]]
−
*** [[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[manual]]:
+
*** Tool: [[pathwaytools]]
−
** [[primary_network]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[annotation]]:
+
*** Tool: [[pathwaytools]]
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxoacyl-synthase}}
+
{{#set: common name=para-nitrobenzyl_esterase}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=protein_chloroplastic}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: common name=serine_esterase}}
−
{{#set: ec number=EC-2.3.1.41}}
+
{{#set: common name=alpha_beta_hydrolase_fold_protein}}
−
{{#set: gene associated=Tiso_gene_14485|Tiso_gene_15991|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_136|Tiso_gene_19302|Tiso_gene_10876|Tiso_gene_5939|Tiso_gene_135}}
+
{{#set: common name=sialate_o-acetylesterase-like_protein}}
−
{{#set: in pathway=PWY3O-355}}
+
{{#set: common name=ORF}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=lysophospholipase}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: common name=alpha_beta_hydrolase}}
−
{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
+
{{#set: ec number=EC-3.1.1.1}}
−
{{#set: reconstruction category=manual}}
+
{{#set: gene associated=Tiso_gene_10066|Tiso_gene_4606|Tiso_gene_1538|Tiso_gene_11351|Tiso_gene_17029|Tiso_gene_19778|Tiso_gene_16518|Tiso_gene_2556|Tiso_gene_12686|Tiso_gene_9429|Tiso_gene_1537|Tiso_gene_1922|Tiso_gene_4650}}
−
{{#set: reconstruction source=primary_network}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:37, 21 March 2018

Reaction RXN-12252

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • para-nitrobenzyl_esterase
    • protein_chloroplastic
    • serine_esterase
    • alpha_beta_hydrolase_fold_protein
    • sialate_o-acetylesterase-like_protein
    • ORF
    • lysophospholipase
    • alpha_beta_hydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 salicyl-6-hydroxy-2-cyclohexene-on-oyl[c] + 1 H2O[c] => 1 6-hydroxy-2-cyclohexen-one-carboxylate[c] + 1 H+[c] + 1 salicyl alcohol[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12252&oldid=42798"