Difference between revisions of "RXN-12460"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.3.2.8-RXN 3.3.2.8-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** limonene-12-epoxide_hyd...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12460 RXN-12460] == * direction: ** LEFT-TO-RIGHT * common name: ** L-asparaginyl-tRNAasn hydro...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.3.2.8-RXN 3.3.2.8-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12460 RXN-12460] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** limonene-12-epoxide_hydrolase_protein
+
** L-asparaginyl-tRNAasn hydrolase
 +
** peptidyl-trna_hydrolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.3.2.8 EC-3.3.2.8]
+
** [http://enzyme.expasy.org/EC/3.1.1.29 EC-3.1.1.29]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[4R-Limonene-1-2-epoxides]][c] '''=>''' 1 [[CPD-8222]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[Charged-ASN-tRNAs]][c] '''=>''' 1 [[ASN-tRNAs]][c] '''+''' 1 [[ASN]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a (4R)-1,2-epoxymenth-8-ene[c] '''=>''' 1 (1S,2S,4R)-limonene-1,2-diol[c]
+
** 1 H2O[c] '''+''' 1 an L-asparaginyl-[tRNAasn][c] '''=>''' 1 tRNAasn[c] '''+''' 1 L-asparagine[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_15422]]
+
* Gene: [[Tiso_gene_7443]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14300]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13800]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5923]], limonene degradation I (D-limonene): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5923 PWY-5923]
+
* [[PWY490-4]], L-asparagine biosynthesis III (tRNA-dependent): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-4 PWY490-4]
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10700 10700]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=limonene-12-epoxide_hydrolase_protein}}
+
{{#set: common name=L-asparaginyl-tRNAasn hydrolase}}
−
{{#set: ec number=EC-3.3.2.8}}
+
{{#set: common name=peptidyl-trna_hydrolase}}
−
{{#set: gene associated=Tiso_gene_15422}}
+
{{#set: ec number=EC-3.1.1.29}}
−
{{#set: in pathway=PWY-5923}}
+
{{#set: gene associated=Tiso_gene_7443|Tiso_gene_14300|Tiso_gene_13800}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=PWY490-4}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:05, 21 March 2018

Reaction RXN-12460

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • L-asparaginyl-tRNAasn hydrolase
    • peptidyl-trna_hydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 an L-asparaginyl-[tRNAasn][c] => 1 tRNAasn[c] + 1 L-asparagine[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY490-4, L-asparagine biosynthesis III (tRNA-dependent): PWY490-4
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12460&oldid=45856"