Difference between revisions of "RXN-12560"

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(Created page with "Category:Gene == Gene Tiso_gene_3210 == * left end position: ** 6735 * transcription direction: ** POSITIVE * right end position: ** 13237 * centisome position: ** 39.0661...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_3210 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] ==
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* left end position:
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* direction:
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** 6735
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** polyketide_synthase
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* right end position:
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* ec number:
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** 13237
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** 39.066124   
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
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** (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
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** β-hydroxyacyl-ACP dehydrase
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** HDDase
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** β-hydroxyacyl-acyl carrier protein dehydratase
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** FabA
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** β-hydroxydecanoyl thiol ester dehydrase
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** β-hydroxydecanoate dehydrase
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** D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN-15556]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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***ec-number
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* With common name(s):
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* [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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** 1 a (3R)-3-hydroxydecanoyl-[acp][c] '''=>''' 1 a (2E)-dec-2-enoyl-[acp][c] '''+''' 1 H2O[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-7511]]
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6884]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=6735}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: right end position=13237}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: centisome position=39.066124    }}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: pathway associated=PWY-7511}}
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{{#set: common name=(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxyacyl-ACP dehydrase|HDDase|β-hydroxyacyl-acyl carrier protein dehydratase|FabA|β-hydroxydecanoyl thiol ester dehydrase|β-hydroxydecanoate dehydrase|D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}}
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{{#set: gene associated=Tiso_gene_135|Tiso_gene_500|Tiso_gene_6884|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_13394}}
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{{#set: in pathway=PWY-5971|PWY-5994|PWY0-862}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:42, 10 January 2018

Reaction RXN-9655

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
  • ec number:
  • Synonym(s):
    • (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
    • β-hydroxyacyl-ACP dehydrase
    • HDDase
    • β-hydroxyacyl-acyl carrier protein dehydratase
    • FabA
    • β-hydroxydecanoyl thiol ester dehydrase
    • β-hydroxydecanoate dehydrase
    • D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY0-862, (5Z)-dodec-5-enoate biosynthesis: PWY0-862
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • "(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase" cannot be used as a page name in this wiki.
  • "D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase" cannot be used as a page name in this wiki.




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12560&oldid=14216"