Difference between revisions of "RXN-12710"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1441 RXN0-1441] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1441 RXN0-1441] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** ORF
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** mixed acid fermentation
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* ec number:
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** [http://enzyme.expasy.org/EC/3.6.1.53 EC-3.6.1.53]
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** [http://enzyme.expasy.org/EC/3.6.1.13 EC-3.6.1.13]
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* Synonym(s):
 
* Synonym(s):
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** fermentation
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''16''' reactions in the full pathway
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** 1 [[ADENOSINE_DIPHOSPHATE_RIBOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-15317]][c] '''+''' 1 [[AMP]][c] '''+''' 2 [[PROTON]][c]
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* [[ACETALD-DEHYDROG-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 ADP-D-ribose[c] '''+''' 1 H2O[c] '''=>''' 1 D-ribofuranose 5-phosphate[c] '''+''' 1 AMP[c] '''+''' 2 H+[c]
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*** [[Tiso_gene_7649]]
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*** [[Tiso_gene_2052]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_7189]]
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*** [[orthology-creinhardtii]]
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** EXPERIMENTAL_ANNOTATION
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* [[ACONITATEDEHYDR-RXN]]
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***AUTOMATED-NAME-MATCH
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** 1 associated gene(s):
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* [[Tiso_gene_17632]]
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*** [[Tiso_gene_13007]]
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** [[pantograph]]-[[esiliculosus]]
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** 3 reconstruction source(s) associated:
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* [[Tiso_gene_15496]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_17630]]
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* [[ACONITATEHYDR-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 1 associated gene(s):
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* [[Tiso_gene_9180]]
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*** [[Tiso_gene_13007]]
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** [[pantograph]]-[[athaliana]]
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_2747]]
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*** [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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* [[ALCOHOL-DEHYDROG-RXN]]
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***EC-NUMBER
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** 6 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_7649]]
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== Reconstruction information  ==
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*** [[Tiso_gene_18459]]
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* [[orthology]]:
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*** [[Tiso_gene_6562]]
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** [[pantograph]]:
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*** [[Tiso_gene_6563]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_5424]]
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*** [[athaliana]]
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*** [[Tiso_gene_5425]]
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* [[annotation]]:
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** 2 reconstruction source(s) associated:
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** [[pathwaytools]]:
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*** [[annotation-in-silico_annotation]]
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*** [[experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[in-silico_annotation]]
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* [[CITSYN-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18030]]
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*** [[Tiso_gene_9601]]
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*** [[Tiso_gene_9603]]
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*** [[Tiso_gene_9602]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6720]]
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*** [[Tiso_gene_3691]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_1990]]
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*** [[Tiso_gene_2323]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=FHLMULTI-RXN FHLMULTI-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVFORMLY-RXN PYRUVFORMLY-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10412 10412]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01054 R01054]
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{{#set: taxonomic range=TAX-2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=mixed acid fermentation}}
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{{#set: common name=ORF}}
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{{#set: common name=fermentation}}
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{{#set: ec number=EC-3.6.1.53}}
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{{#set: reaction found=9}}
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{{#set: ec number=EC-3.6.1.13}}
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{{#set: total reaction=16}}
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{{#set: gene associated=Tiso_gene_7189|Tiso_gene_17632|Tiso_gene_15496|Tiso_gene_17630|Tiso_gene_9180|Tiso_gene_2747}}
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{{#set: completion rate=56.0}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 19:11, 18 March 2018

Pathway FERMENTATION-PWY

  • taxonomic range:
  • common name:
    • mixed acid fermentation
  • Synonym(s):
    • fermentation

Reaction(s) found

9 reactions found over 16 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12710&oldid=22517"