Difference between revisions of "RXN-12878"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_12792 == * right end position: ** 6529 * transcription direction: ** POSITIVE * left end position: ** 3927 * centisome position: ** 58.4810...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12878 RXN-12878] == * direction: ** LEFT-TO-RIGHT * common name: ** ferredoxin-dependent_glutam...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12878 RXN-12878] == |
| − | * | + | * direction: |
| − | + | ** LEFT-TO-RIGHT | |
| − | + | * common name: | |
| − | ** | + | ** ferredoxin-dependent_glutamate_synthase |
| − | * | + | |
| − | ** | + | |
| − | + | ||
| − | + | ||
* Synonym(s): | * Synonym(s): | ||
| − | == | + | == Reaction Formula == |
| − | * | + | * With identifiers: |
| + | ** 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] | ||
| + | * With common name(s): | ||
| + | ** 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 H2O[c] '''+''' 1 L-glutamate[c] '''=>''' 1 2-oxoglutarate[c] '''+''' 1 ammonium[c] '''+''' 2 H+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] | ||
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Tiso_gene_1773]] | ||
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
| − | *** Assignment: | + | *** Assignment: AUTOMATED-NAME-MATCH |
| + | * Gene: [[Tiso_gene_1154]] | ||
| + | ** Source: [[annotation-experimental_annotation]] | ||
| + | *** Assignment: AUTOMATED-NAME-MATCH | ||
** Source: [[orthology-esiliculosus]] | ** Source: [[orthology-esiliculosus]] | ||
| − | * | + | * Gene: [[Tiso_gene_2581]] |
| − | ** Source: [[orthology- | + | ** Source: [[orthology-esiliculosus]] |
| − | ** Source: [[orthology- | + | == Pathways == |
| − | * | + | == Reconstruction information == |
| − | ** Source: [[ | + | * Category: [[orthology]] |
| − | * | + | ** Source: [[orthology-esiliculosus]] |
| − | ** Source: [[ | + | *** Tool: [[pantograph]] |
| − | + | * Category: [[annotation]] | |
| + | ** Source: [[annotation-experimental_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R10086 R10086] |
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: | + | {{#set: common name=ferredoxin-dependent_glutamate_synthase}} |
| − | {{#set: | + | {{#set: gene associated=Tiso_gene_1773|Tiso_gene_1154|Tiso_gene_2581}} |
| + | {{#set: in pathway=}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 21:24, 21 March 2018
Contents
Reaction RXN-12878
- direction:
- LEFT-TO-RIGHT
- common name:
- ferredoxin-dependent_glutamate_synthase
- Synonym(s):
Reaction Formula
- With identifiers:
- 2 Oxidized-ferredoxins[c] + 1 WATER[c] + 1 GLT[c] => 1 2-KETOGLUTARATE[c] + 1 AMMONIUM[c] + 2 PROTON[c] + 2 Reduced-ferredoxins[c]
- With common name(s):
- 2 an oxidized ferredoxin [iron-sulfur] cluster[c] + 1 H2O[c] + 1 L-glutamate[c] => 1 2-oxoglutarate[c] + 1 ammonium[c] + 2 H+[c] + 2 a reduced ferredoxin [iron-sulfur] cluster[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_1773
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_1154
- Source: annotation-experimental_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: orthology-esiliculosus
- Source: annotation-experimental_annotation
- Gene: Tiso_gene_2581
- Source: orthology-esiliculosus
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
External links
- LIGAND-RXN:
