Difference between revisions of "RXN-14140"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DAHPSYN-RXN DAHPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** phospho-2-dehydro-3-deoxyh...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DAHPSYN-RXN DAHPSYN-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** protoporphyrinogen_ix_oxidase_usually_abbreviated
+
** phospho-2-dehydro-3-deoxyheptonate_phe-sensitive
 +
** 3-deoxy-7-phosphoheptulonate_synthase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
+
** [http://enzyme.expasy.org/EC/2.5.1.54 EC-2.5.1.54]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c]
+
** 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 3 oxygen[c] '''+''' 1 protoporphyrinogen IX[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c]
+
** 1 phosphoenolpyruvate[c] '''+''' 1 D-erythrose 4-phosphate[c] '''+''' 1 H2O[c] '''<=>''' 1 3-deoxy-D-arabino-heptulosonate 7-phosphate[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11986]]
+
* Gene: [[Tiso_gene_18937]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_15401]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_18975]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_7372]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8935]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8934]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
* [[PWY-6164]], 3-dehydroquinate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6164 PWY-6164]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
** Source: [[orthology-synechocystis]]
+
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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** Source: [[manual-primary_network]]
 
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14717 14717]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01826 R01826]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P50336 P50336]
+
** [http://www.uniprot.org/uniprot/P0A1B5 P0A1B5]
−
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
+
** [http://www.uniprot.org/uniprot/Q9JSQ8 Q9JSQ8]
−
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
+
** [http://www.uniprot.org/uniprot/P00887 P00887]
−
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
+
** [http://www.uniprot.org/uniprot/P0AB91 P0AB91]
−
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
+
** [http://www.uniprot.org/uniprot/P00888 P00888]
−
** [http://www.uniprot.org/uniprot/P51175 P51175]
+
** [http://www.uniprot.org/uniprot/Q9PPJ1 Q9PPJ1]
−
** [http://www.uniprot.org/uniprot/O24163 O24163]
+
** [http://www.uniprot.org/uniprot/P46245 P46245]
−
** [http://www.uniprot.org/uniprot/O24164 O24164]
+
** [http://www.uniprot.org/uniprot/P35170 P35170]
−
** [http://www.uniprot.org/uniprot/O64384 O64384]
+
** [http://www.uniprot.org/uniprot/P44303 P44303]
−
** [http://www.uniprot.org/uniprot/O64385 O64385]
+
** [http://www.uniprot.org/uniprot/P34725 P34725]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/P39912 P39912]
−
{{#set: common name=protoporphyrinogen_ix_oxidase_usually_abbreviated}}
+
** [http://www.uniprot.org/uniprot/P14843 P14843]
−
{{#set: ec number=EC-1.3.3.4}}
+
** [http://www.uniprot.org/uniprot/Q02285 Q02285]
−
{{#set: gene associated=Tiso_gene_11986|Tiso_gene_15401}}
+
** [http://www.uniprot.org/uniprot/P32449 P32449]
−
{{#set: in pathway=PWY0-1415|PWY-7159|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II}}
+
** [http://www.uniprot.org/uniprot/P37215 P37215]
 +
** [http://www.uniprot.org/uniprot/P37216 P37216]
 +
** [http://www.uniprot.org/uniprot/Q09755 Q09755]
 +
** [http://www.uniprot.org/uniprot/Q00218 Q00218]
 +
** [http://www.uniprot.org/uniprot/P29976 P29976]
 +
** [http://www.uniprot.org/uniprot/Q42921 Q42921]
 +
** [http://www.uniprot.org/uniprot/O22407 O22407]
 +
** [http://www.uniprot.org/uniprot/O52798 O52798]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=phospho-2-dehydro-3-deoxyheptonate_phe-sensitive}}
 +
{{#set: common name=3-deoxy-7-phosphoheptulonate_synthase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-2.5.1.54}}
 +
{{#set: gene associated=Tiso_gene_18937|Tiso_gene_18975|Tiso_gene_7372|Tiso_gene_8935|Tiso_gene_8934}}
 +
{{#set: in pathway=PWY-6164}}
 
{{#set: reconstruction category=orthology|manual|annotation}}
 
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:09, 21 March 2018

Reaction DAHPSYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • phospho-2-dehydro-3-deoxyheptonate_phe-sensitive
    • 3-deoxy-7-phosphoheptulonate_synthase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6164, 3-dehydroquinate biosynthesis I: PWY-6164
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links






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