Difference between revisions of "RXN-14213"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-330...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14213 RXN-14213] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14213 RXN-14213] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** flavin biosynthesis I (bacteria and plants)
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/3.6.1 EC-3.6.1]
 
* Synonym(s):
 
* Synonym(s):
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** riboflavin, FMN and FAD biosynthesis
 
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** vitamin B2 biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''7''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[DIOHBUTANONEPSYN-RXN]]
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** 1 [[TDP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[TMP]][c] '''+''' 1 [[Pi]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_14275]]
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** 1 dTDP[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 dTMP[c] '''+''' 1 phosphate[c]
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*** [[Tiso_gene_19932]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_20236]]
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* [[FADSYN-RXN]]
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** Source: [[orthology-esiliculosus]]
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** 4 associated gene(s):
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* Gene: [[Tiso_gene_12899]]
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*** [[Tiso_gene_5393]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_5392]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_7479]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_1086]]
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*** Assignment: EC-NUMBER
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** 4 reconstruction source(s) associated:
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** Source: [[orthology-creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[orthology-creinhardtii]]
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== Reconstruction information  ==
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*** [[orthology-synechocystis]]
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* Category: [[orthology]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* [[GTP-CYCLOHYDRO-II-RXN]]
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*** Tool: [[pantograph]]
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** 3 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_14275]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_19932]]
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* Category: [[annotation]]
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*** [[Tiso_gene_8035]]
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** Source: [[annotation-experimental_annotation]]
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** 4 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RIBOFLAVIN-SYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13686]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RIBOFLAVINKIN-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_7479]]
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*** [[Tiso_gene_1086]]
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*** [[Tiso_gene_16837]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RIBOFLAVINSYNDEAM-RXN]]
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** 1 associated gene(s):
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−
*** [[Tiso_gene_1389]]
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−
** 4 reconstruction source(s) associated:
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−
*** [[orthology-athaliana]]
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−
*** [[annotation-in-silico_annotation]]
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−
*** [[orthology-synechocystis]]
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−
*** [[orthology-esiliculosus]]
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* [[RIBOFLAVINSYNREDUC-RXN]]
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−
** 2 associated gene(s):
+
−
*** [[Tiso_gene_8035]]
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−
*** [[Tiso_gene_1389]]
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−
** 4 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-synechocystis]]
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−
*** [[orthology-esiliculosus]]
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−
== Reaction(s) not found ==
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−
* [http://metacyc.org/META/NEW-IMAGE?object=LUMAZINESYN-RXN LUMAZINESYN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RIBOPHOSPHAT-RXN RIBOPHOSPHAT-RXN]
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== External links  ==
 
== External links  ==
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* ECOCYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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{{#set: common name=ORF}}
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* ARACYC:
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{{#set: ec number=EC-3.6.1}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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{{#set: gene associated=Tiso_gene_20236|Tiso_gene_12899}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: in pathway=}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: common name=flavin biosynthesis I (bacteria and plants)}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-creinhardtii|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: common name=riboflavin, FMN and FAD biosynthesis|vitamin B2 biosynthesis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reaction found=7}}
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{{#set: total reaction=9}}
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{{#set: completion rate=78.0}}
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Latest revision as of 20:13, 21 March 2018

Reaction RXN-14213

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dTDP[c] + 1 H2O[c] => 1 H+[c] + 1 dTMP[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14213&oldid=40205"