Difference between revisions of "RXN-14326"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** delta-1-pyrroline-5-...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14326 RXN-14326] == * direction: ** LEFT-TO-RIGHT * common name: ** diphthine_synthase * ec num...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14326 RXN-14326] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** diphthine_synthase
−
** delta-1-pyrroline-5-carboxylate_synthase
+
−
** delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.88 EC-1.2.1.88]
+
** [http://enzyme.expasy.org/EC/2.1.1.98 EC-2.1.1.98]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLT]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[2-3-CARBOXY-3-AMINOPROPYL-L-HISTIDINE]][c] '''+''' 3 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 3 [[PROTON]][c] '''+''' 1 [[DIPHTINE]][c] '''+''' 3 [[ADENOSYL-HOMO-CYS]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 L-glutamate-5-semialdehyde[c] '''+''' 1 H2O[c] '''=>''' 1 L-glutamate[c] '''+''' 2 H+[c] '''+''' 1 NADH[c]
+
** 1 a 2-[(3S)-3-amino-3-carboxypropyl]-L-histidine-[translation elongation factor 2][c] '''+''' 3 S-adenosyl-L-methionine[c] '''=>''' 3 H+[c] '''+''' 1 a diphthine-[translation elongation factor 2][c] '''+''' 3 S-adenosyl-L-homocysteine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_7381]]
+
* Gene: [[Tiso_gene_15743]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
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*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_886]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_3513]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_18337]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18338]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16634]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9680]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_6952]]
+
−
** [[pantograph]]-[[synechocystis]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY]
+
* [[PWY-6482]], diphthamide biosynthesis (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6482 PWY-6482]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-6853]], ethylene biosynthesis II (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6853 PWY-6853]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30236 30236]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00245 R00245]
+
** [http://www.genome.jp/dbget-bin/www_bget?R10306 R10306]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: common name=diphthine_synthase}}
−
{{#set: common name=delta-1-pyrroline-5-carboxylate_synthase}}
+
{{#set: ec number=EC-2.1.1.98}}
−
{{#set: common name=delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial}}
+
{{#set: gene associated=Tiso_gene_15743}}
−
{{#set: ec number=EC-1.2.1.88}}
+
{{#set: in pathway=PWY-6482}}
−
{{#set: gene associated=Tiso_gene_7381|Tiso_gene_886|Tiso_gene_3513|Tiso_gene_18337|Tiso_gene_18338|Tiso_gene_16634|Tiso_gene_9680|Tiso_gene_6952}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: in pathway=PROUT-PWY|ARGASEDEG-PWY|PWY-6853}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:46, 21 March 2018

Reaction RXN-14326

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • diphthine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6482, diphthamide biosynthesis (archaea): PWY-6482
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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