Difference between revisions of "RXN-14799"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14799 RXN-14799] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14799 RXN-14799] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2870 TAX-2870]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
 
* common name:
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** vitamin E biosynthesis (tocopherols)
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** thiolase
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** acetyl-_c-acetyltransferase
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** 3-ketoacyl-_thiolase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
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** tocopherol biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''5''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
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** 1 [[CPD-15687]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-15688]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_18977]]
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** 1 5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 3-cis, 5-trans-dodecadienoyl-CoA[c]
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*** [[Tiso_gene_18976]]
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*** [[Tiso_gene_18328]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_10116]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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* [[RXN-2541]]
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*** Assignment: EC-NUMBER
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** 1 associated gene(s):
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* Gene: [[Tiso_gene_3856]]
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*** [[Tiso_gene_13582]]
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** Source: [[annotation-in-silico_annotation]]
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** 3 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_15327]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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* [[RXN-2542]]
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* Gene: [[Tiso_gene_17451]]
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** 2 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_2596]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_11392]]
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** Source: [[annotation-experimental_annotation]]
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** 4 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_3855]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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* [[RXN-2562]]
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*** Assignment: EC-NUMBER
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_6738]]
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* [[PWY-7340]], 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7340 PWY-7340]
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** 3 reconstruction source(s) associated:
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** '''3''' reactions found over '''10''' reactions in the full pathway
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*** [[orthology-athaliana]]
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== Reconstruction information  ==
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*** [[orthology-creinhardtii]]
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* Category: [[annotation]]
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*** [[orthology-synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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* [[TOCOPHEROL-O-METHYLTRANSFERASE-RXN]]
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*** Tool: [[pathwaytools]]
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** 1 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6738]]
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*** Tool: [[pathwaytools]]
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** 2 reconstruction source(s) associated:
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−
*** [[orthology-creinhardtii]]
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−
*** [[orthology-synechocystis]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2543 RXN-2543]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2561 RXN-2561]
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== External links  ==
 
== External links  ==
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* ARACYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-1422 PWY-1422]
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{{#set: common name=thiolase}}
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{{#set: taxonomic range=TAX-1117}}
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: taxonomic range=TAX-3041}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: taxonomic range=TAX-2870}}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: taxonomic range=TAX-2763}}
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{{#set: gene associated=Tiso_gene_10116|Tiso_gene_3856|Tiso_gene_15327|Tiso_gene_17451|Tiso_gene_3855}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: in pathway=PWY-7340}}
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{{#set: common name=vitamin E biosynthesis (tocopherols)}}
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{{#set: reconstruction category=annotation}}
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{{#set: common name=tocopherol biosynthesis}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reaction found=5}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: total reaction=7}}
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{{#set: completion rate=71.0}}
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Latest revision as of 20:20, 21 March 2018

Reaction RXN-14799

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thiolase
    • acetyl-_c-acetyltransferase
    • 3-ketoacyl-_thiolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA[c] + 1 coenzyme A[c] => 1 acetyl-CoA[c] + 1 3-cis, 5-trans-dodecadienoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7340, 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast): PWY-7340
    • 3 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14799&oldid=40976"