Difference between revisions of "RXN-15556"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** inosine_triphosph...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15556 RXN-15556] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_e3_ubiquitin-prote...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15556 RXN-15556] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** inosine_triphosphate
+
** probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10
 +
** ORF
 +
** ubiquitin_protein_ligase
 +
** peptidyl-prolyl_cis-trans_isomerase-like_2
 +
** e3_ubiquitin_ligase
 +
** zinc_finger_protein
 +
** ubiquitin-conjugating_enzyme_e2
 +
** o_ubiquitin_protein_ligase_e3a
 +
** stackhouse_genomicscaffold_453
 +
** f-box_only_protein_11
 +
** ubiquitin-conjugating_enzymee2
 +
** ubiquitin-protein_ligase
 +
** low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like
 +
** hect_e3_ubiquitin_ligase
 +
** secretion-regulating_guanine_nucleotide_exchange
 +
** ubiquitinconjugating_enzyme_e2
 +
** auxin_transport_protein_isoform_2
 +
** zinc_n-recogninwd40-like
 +
** ubiquitin-
 +
** f-box_lrr-repeat_protein_2
 +
** brca1-associated_ring_domain_protein_1
 +
** os06g0159400_protein
 +
** ankyrin_repeatdomain-containingprotein-50partial
 +
** phosphoglycerate_mutase_family_protein
 +
** tnf_receptor-associated_factor
 +
** wd_sam_and_u-box_domain_containing_1
 +
** anaphase_promoting_complex_subunit_11
 +
** hrd1-like_protein
 +
** e3_isg15--protein_ligase_herc6
 +
** rni-like_protein
 +
** f-box_lrr-repeat_protein
 +
** regulator_of_chromosome_condensation_rcc1
 +
** probable_e3_ubiquitin-protein_ligase_herc4
 +
** rab_family_gtpase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.23 EC-3.6.1.23]
+
** [http://enzyme.expasy.org/EC/2.3.2.23 EC-2.3.2.23]
−
** [http://enzyme.expasy.org/EC/3.6.1.9 EC-3.6.1.9]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[DUTP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[DUMP]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[S-ubiquitinyl-UAP-E1-L-cysteine]][c] '''+''' 1 [[Ubiquitin-carrier-protein-E2-L-cysteine]][c] '''=>''' 1 [[S-ubiquitinyl-UCP-E2-L-cysteine]][c] '''+''' 1 [[Ubiquitin-activating-protein-E1-L-cys]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 dUTP[c] '''=>''' 1 diphosphate[c] '''+''' 1 dUMP[c] '''+''' 1 H+[c]
+
** 1 an S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine[c] '''+''' 1 an [E2 ubiquitin-conjugating enzyme]-L-cysteine[c] '''=>''' 1 an S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine[c] '''+''' 1 an [E1 ubiquitin-activating enzyme]-L-cysteine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18793]]
+
* Gene: [[Tiso_gene_13619]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_6946]]
−
* [[Tiso_gene_18792]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_14181]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_612]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15097]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8801]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17195]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8048]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1586]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_20066]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9662]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1585]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5776]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1592]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4585]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17196]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6910]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8636]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16913]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18824]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1427]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2226]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2802]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7719]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6902]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_557]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14360]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4094]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1583]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5502]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15467]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3418]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4461]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15885]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_7308]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9666]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17363]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6903]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3080]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17423]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8637]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8483]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12298]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9575]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16166]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1426]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7955]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3419]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14452]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19647]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12348]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14182]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1589]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4484]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3210]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10888]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1590]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14567]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1593]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2932]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_558]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15624]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17030]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14451]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_11148]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15884]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_12619]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_1591]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12029]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9520]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1587]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1253]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1588]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4460]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1582]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10782]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15214]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4966]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2815]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16642]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5622]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17112]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14650]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17517]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17194]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12309]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11823]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3081]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1584]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18752]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3211]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7506]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6901]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17004]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206]
+
* [[PWY-7511]], protein ubiquitylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7511 PWY-7511]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 
−
** '''12''' reactions found over '''17''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10248 10248]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
 
−
** [http://www.uniprot.org/uniprot/P33316 P33316]
 
−
** [http://www.uniprot.org/uniprot/O15923 O15923]
 
−
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
 
−
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
 
−
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
 
−
** [http://www.uniprot.org/uniprot/P43792 P43792]
 
−
** [http://www.uniprot.org/uniprot/P32518 P32518]
 
−
** [http://www.uniprot.org/uniprot/P68635 P68635]
 
−
** [http://www.uniprot.org/uniprot/P68634 P68634]
 
−
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
 
−
** [http://www.uniprot.org/uniprot/P03195 P03195]
 
−
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
 
−
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
 
−
** [http://www.uniprot.org/uniprot/P33317 P33317]
 
−
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
 
−
** [http://www.uniprot.org/uniprot/P43058 P43058]
 
−
** [http://www.uniprot.org/uniprot/O80091 O80091]
 
−
** [http://www.uniprot.org/uniprot/O36404 O36404]
 
−
** [http://www.uniprot.org/uniprot/O41033 O41033]
 
−
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 
−
** [http://www.uniprot.org/uniprot/O39251 O39251]
 
−
** [http://www.uniprot.org/uniprot/O01934 O01934]
 
−
** [http://www.uniprot.org/uniprot/P10234 P10234]
 
−
** [http://www.uniprot.org/uniprot/P06968 P06968]
 
−
** [http://www.uniprot.org/uniprot/P09254 P09254]
 
−
** [http://www.uniprot.org/uniprot/P28892 P28892]
 
−
** [http://www.uniprot.org/uniprot/P28893 P28893]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=inosine_triphosphate}}
+
{{#set: common name=probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10}}
−
{{#set: ec number=EC-3.6.1.23}}
+
{{#set: common name=ORF}}
−
{{#set: ec number=EC-3.6.1.9}}
+
{{#set: common name=ubiquitin_protein_ligase}}
−
{{#set: gene associated=Tiso_gene_18793|Tiso_gene_18792}}
+
{{#set: common name=peptidyl-prolyl_cis-trans_isomerase-like_2}}
−
{{#set: in pathway=PWY-7206|PWY-7184|PWY-7187|PWY-6545|PWY0-166}}
+
{{#set: common name=e3_ubiquitin_ligase}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: common name=zinc_finger_protein}}
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-athaliana}}
+
{{#set: common name=ubiquitin-conjugating_enzyme_e2}}
 +
{{#set: common name=o_ubiquitin_protein_ligase_e3a}}
 +
{{#set: common name=stackhouse_genomicscaffold_453}}
 +
{{#set: common name=f-box_only_protein_11}}
 +
{{#set: common name=ubiquitin-conjugating_enzymee2}}
 +
{{#set: common name=ubiquitin-protein_ligase}}
 +
{{#set: common name=low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like}}
 +
{{#set: common name=hect_e3_ubiquitin_ligase}}
 +
{{#set: common name=secretion-regulating_guanine_nucleotide_exchange}}
 +
{{#set: common name=ubiquitinconjugating_enzyme_e2}}
 +
{{#set: common name=auxin_transport_protein_isoform_2}}
 +
{{#set: common name=zinc_n-recogninwd40-like}}
 +
{{#set: common name=ubiquitin-}}
 +
{{#set: common name=f-box_lrr-repeat_protein_2}}
 +
{{#set: common name=brca1-associated_ring_domain_protein_1}}
 +
{{#set: common name=os06g0159400_protein}}
 +
{{#set: common name=ankyrin_repeatdomain-containingprotein-50partial}}
 +
{{#set: common name=phosphoglycerate_mutase_family_protein}}
 +
{{#set: common name=tnf_receptor-associated_factor}}
 +
{{#set: common name=wd_sam_and_u-box_domain_containing_1}}
 +
{{#set: common name=anaphase_promoting_complex_subunit_11}}
 +
{{#set: common name=hrd1-like_protein}}
 +
{{#set: common name=e3_isg15--protein_ligase_herc6}}
 +
{{#set: common name=rni-like_protein}}
 +
{{#set: common name=f-box_lrr-repeat_protein}}
 +
{{#set: common name=regulator_of_chromosome_condensation_rcc1}}
 +
{{#set: common name=probable_e3_ubiquitin-protein_ligase_herc4}}
 +
{{#set: common name=rab_family_gtpase}}
 +
{{#set: ec number=EC-2.3.2.23}}
 +
{{#set: gene associated=Tiso_gene_13619|Tiso_gene_6946|Tiso_gene_14181|Tiso_gene_612|Tiso_gene_15097|Tiso_gene_8801|Tiso_gene_17195|Tiso_gene_8048|Tiso_gene_1586|Tiso_gene_20066|Tiso_gene_9662|Tiso_gene_1585|Tiso_gene_5776|Tiso_gene_1592|Tiso_gene_4585|Tiso_gene_17196|Tiso_gene_6910|Tiso_gene_8636|Tiso_gene_16913|Tiso_gene_18824|Tiso_gene_1427|Tiso_gene_2226|Tiso_gene_2802|Tiso_gene_7719|Tiso_gene_6902|Tiso_gene_557|Tiso_gene_14360|Tiso_gene_4094|Tiso_gene_1583|Tiso_gene_5502|Tiso_gene_15467|Tiso_gene_3418|Tiso_gene_4461|Tiso_gene_15885|Tiso_gene_7308|Tiso_gene_9666|Tiso_gene_17363|Tiso_gene_6903|Tiso_gene_3080|Tiso_gene_17423|Tiso_gene_8637|Tiso_gene_8483|Tiso_gene_12298|Tiso_gene_9575|Tiso_gene_16166|Tiso_gene_1426|Tiso_gene_7955|Tiso_gene_3419|Tiso_gene_14452|Tiso_gene_19647|Tiso_gene_12348|Tiso_gene_14182|Tiso_gene_1589|Tiso_gene_4484|Tiso_gene_3210|Tiso_gene_10888|Tiso_gene_1590|Tiso_gene_14567|Tiso_gene_1593|Tiso_gene_2932|Tiso_gene_558|Tiso_gene_15624|Tiso_gene_17030|Tiso_gene_14451|Tiso_gene_11148|Tiso_gene_15884|Tiso_gene_12619|Tiso_gene_1591|Tiso_gene_12029|Tiso_gene_9520|Tiso_gene_1587|Tiso_gene_1253|Tiso_gene_1588|Tiso_gene_4460|Tiso_gene_1582|Tiso_gene_10782|Tiso_gene_15214|Tiso_gene_4966|Tiso_gene_2815|Tiso_gene_16642|Tiso_gene_5622|Tiso_gene_17112|Tiso_gene_14650|Tiso_gene_17517|Tiso_gene_17194|Tiso_gene_12309|Tiso_gene_11823|Tiso_gene_3081|Tiso_gene_1584|Tiso_gene_18752|Tiso_gene_3211|Tiso_gene_7506|Tiso_gene_6901|Tiso_gene_17004}}
 +
{{#set: in pathway=PWY-7511}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:03, 21 March 2018

Reaction RXN-15556

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10
    • ORF
    • ubiquitin_protein_ligase
    • peptidyl-prolyl_cis-trans_isomerase-like_2
    • e3_ubiquitin_ligase
    • zinc_finger_protein
    • ubiquitin-conjugating_enzyme_e2
    • o_ubiquitin_protein_ligase_e3a
    • stackhouse_genomicscaffold_453
    • f-box_only_protein_11
    • ubiquitin-conjugating_enzymee2
    • ubiquitin-protein_ligase
    • low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like
    • hect_e3_ubiquitin_ligase
    • secretion-regulating_guanine_nucleotide_exchange
    • ubiquitinconjugating_enzyme_e2
    • auxin_transport_protein_isoform_2
    • zinc_n-recogninwd40-like
    • ubiquitin-
    • f-box_lrr-repeat_protein_2
    • brca1-associated_ring_domain_protein_1
    • os06g0159400_protein
    • ankyrin_repeatdomain-containingprotein-50partial
    • phosphoglycerate_mutase_family_protein
    • tnf_receptor-associated_factor
    • wd_sam_and_u-box_domain_containing_1
    • anaphase_promoting_complex_subunit_11
    • hrd1-like_protein
    • e3_isg15--protein_ligase_herc6
    • rni-like_protein
    • f-box_lrr-repeat_protein
    • regulator_of_chromosome_condensation_rcc1
    • probable_e3_ubiquitin-protein_ligase_herc4
    • rab_family_gtpase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7511, protein ubiquitylation: PWY-7511
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-15556&oldid=45529"