Difference between revisions of "RXN-1602"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidyla...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15745 RXN-15745] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15745 RXN-15745] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** thymidylate_synthase
 
−
** ORF
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.45 EC-2.1.1.45]
+
** [http://enzyme.expasy.org/EC/1.1.5.3 EC-1.1.5.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[DUMP]][c] '''=>''' 1 [[TMP]][c] '''+''' 1 [[DIHYDROFOLATE-GLU-N]][c]
+
** 1 [[ETR-Quinones]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[ETR-Quinols]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 dUMP[c] '''=>''' 1 dTMP[c] '''+''' 1 a 7,8-dihydrofolate[c]
+
** 1 an electron-transfer quinone[c] '''+''' 1 sn-glycerol 3-phosphate[c] '''=>''' 1 glycerone phosphate[c] '''+''' 1 an electron-transfer quinol[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18478]]
+
* Gene: [[Tiso_gene_15777]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_7708]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
+
* [[PWY-4261]], glycerol degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4261 PWY-4261]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
+
* [[PWY-6118]], glycerol-3-phosphate shuttle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6118 PWY-6118]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7199 PWY-7199]
+
* [[PWY-6952]], glycerophosphodiester degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6952 PWY-6952]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
+
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
−
** '''12''' reactions found over '''17''' reactions in the full pathway
+
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-primary_network]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12104 12104]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P19368 P19368]
 
−
** [http://www.uniprot.org/uniprot/Q07422 Q07422]
 
−
** [http://www.uniprot.org/uniprot/P47469 P47469]
 
−
** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57]
 
−
** [http://www.uniprot.org/uniprot/P42326 P42326]
 
−
** [http://www.uniprot.org/uniprot/O02604 O02604]
 
−
** [http://www.uniprot.org/uniprot/P07382 P07382]
 
−
** [http://www.uniprot.org/uniprot/P16126 P16126]
 
−
** [http://www.uniprot.org/uniprot/P13922 P13922]
 
−
** [http://www.uniprot.org/uniprot/P20712 P20712]
 
−
** [http://www.uniprot.org/uniprot/P11044 P11044]
 
−
** [http://www.uniprot.org/uniprot/P45350 P45350]
 
−
** [http://www.uniprot.org/uniprot/P45352 P45352]
 
−
** [http://www.uniprot.org/uniprot/P51820 P51820]
 
−
** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4]
 
−
** [http://www.uniprot.org/uniprot/Q27828 Q27828]
 
−
** [http://www.uniprot.org/uniprot/P09249 P09249]
 
−
** [http://www.uniprot.org/uniprot/P12462 P12462]
 
−
** [http://www.uniprot.org/uniprot/P07606 P07606]
 
−
** [http://www.uniprot.org/uniprot/P00471 P00471]
 
−
** [http://www.uniprot.org/uniprot/P0A884 P0A884]
 
−
** [http://www.uniprot.org/uniprot/P00469 P00469]
 
−
** [http://www.uniprot.org/uniprot/O81395 O81395]
 
−
** [http://www.uniprot.org/uniprot/Q05763 Q05763]
 
−
** [http://www.uniprot.org/uniprot/Q39687 Q39687]
 
−
** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6]
 
−
** [http://www.uniprot.org/uniprot/P06785 P06785]
 
−
** [http://www.uniprot.org/uniprot/P04818 P04818]
 
−
** [http://www.uniprot.org/uniprot/P07607 P07607]
 
−
** [http://www.uniprot.org/uniprot/P13100 P13100]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=thymidylate_synthase}}
+
{{#set: ec number=EC-1.1.5.3}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_15777}}
−
{{#set: ec number=EC-2.1.1.45}}
+
{{#set: in pathway=PWY-4261|PWY-6118|PWY-6952}}
−
{{#set: gene associated=Tiso_gene_18478|Tiso_gene_7708}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7199|PWY-3841|1CMET2-PWY|PWY-7187|PWY0-166|PWY-7184}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=manual|annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 16:50, 21 March 2018

Reaction RXN-15745

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4261, glycerol degradation I: PWY-4261
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6118, glycerol-3-phosphate shuttle: PWY-6118
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6952, glycerophosphodiester degradation: PWY-6952
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-1602&oldid=36628"