Difference between revisions of "RXN-1602"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidyla...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1602 RXN-1602] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/3....")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1602 RXN-1602] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** thymidylate_synthase
 
−
** ORF
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.45 EC-2.1.1.45]
+
** [http://enzyme.expasy.org/EC/3.1.1.34 EC-3.1.1.34]
 +
** [http://enzyme.expasy.org/EC/3.1.1.79 EC-3.1.1.79]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[DUMP]][c] '''=>''' 1 [[TMP]][c] '''+''' 1 [[DIHYDROFOLATE-GLU-N]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[1-2-Diglycerides]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Fatty-Acids]][c] '''+''' 1 [[CPD-409]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 dUMP[c] '''=>''' 1 dTMP[c] '''+''' 1 a 7,8-dihydrofolate[c]
+
** 1 H2O[c] '''+''' 1 a 1,2-diglyceride[c] '''=>''' 1 H+[c] '''+''' 1 a fatty acid[c] '''+''' 1 a 2-acylglycerol[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_18478]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_7708]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
+
* [[LIPAS-PWY]], triacylglycerol degradation: [http://metacyc.org/META/NEW-IMAGE?object=LIPAS-PWY LIPAS-PWY]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7199 PWY-7199]
+
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
+
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
−
** '''12''' reactions found over '''17''' reactions in the full pathway
+
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12104 12104]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18761 18761]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05209 R05209]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19368 P19368]
+
** [http://www.uniprot.org/uniprot/P11153 P11153]
−
** [http://www.uniprot.org/uniprot/Q07422 Q07422]
+
** [http://www.uniprot.org/uniprot/P11152 P11152]
−
** [http://www.uniprot.org/uniprot/P47469 P47469]
+
** [http://www.uniprot.org/uniprot/Q06000 Q06000]
−
** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57]
+
** [http://www.uniprot.org/uniprot/P06858 P06858]
−
** [http://www.uniprot.org/uniprot/P42326 P42326]
+
** [http://www.uniprot.org/uniprot/P11602 P11602]
−
** [http://www.uniprot.org/uniprot/O02604 O02604]
+
** [http://www.uniprot.org/uniprot/P49923 P49923]
−
** [http://www.uniprot.org/uniprot/P07382 P07382]
+
** [http://www.uniprot.org/uniprot/Q29524 Q29524]
−
** [http://www.uniprot.org/uniprot/P16126 P16126]
+
−
** [http://www.uniprot.org/uniprot/P13922 P13922]
+
−
** [http://www.uniprot.org/uniprot/P20712 P20712]
+
−
** [http://www.uniprot.org/uniprot/P11044 P11044]
+
−
** [http://www.uniprot.org/uniprot/P45350 P45350]
+
−
** [http://www.uniprot.org/uniprot/P45352 P45352]
+
−
** [http://www.uniprot.org/uniprot/P51820 P51820]
+
−
** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4]
+
−
** [http://www.uniprot.org/uniprot/Q27828 Q27828]
+
−
** [http://www.uniprot.org/uniprot/P09249 P09249]
+
−
** [http://www.uniprot.org/uniprot/P12462 P12462]
+
−
** [http://www.uniprot.org/uniprot/P07606 P07606]
+
−
** [http://www.uniprot.org/uniprot/P00471 P00471]
+
−
** [http://www.uniprot.org/uniprot/P0A884 P0A884]
+
−
** [http://www.uniprot.org/uniprot/P00469 P00469]
+
−
** [http://www.uniprot.org/uniprot/O81395 O81395]
+
−
** [http://www.uniprot.org/uniprot/Q05763 Q05763]
+
−
** [http://www.uniprot.org/uniprot/Q39687 Q39687]
+
−
** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6]
+
−
** [http://www.uniprot.org/uniprot/P06785 P06785]
+
−
** [http://www.uniprot.org/uniprot/P04818 P04818]
+
−
** [http://www.uniprot.org/uniprot/P07607 P07607]
+
−
** [http://www.uniprot.org/uniprot/P13100 P13100]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=thymidylate_synthase}}
+
{{#set: ec number=EC-3.1.1.34}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-3.1.1.79}}
−
{{#set: ec number=EC-2.1.1.45}}
+
{{#set: in pathway=LIPAS-PWY}}
−
{{#set: gene associated=Tiso_gene_18478|Tiso_gene_7708}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7199|PWY-3841|1CMET2-PWY|PWY-7187|PWY0-166|PWY-7184}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
−
{{#set: reconstruction category=manual|annotation}}
+
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation}}
+
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 21:07, 21 March 2018

Reaction RXN-1602

Reaction Formula

Genes associated with this reaction

Pathways

  • LIPAS-PWY, triacylglycerol degradation: LIPAS-PWY
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




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