Difference between revisions of "RXN-16415"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXPREDISOM-RXN DXPREDISOM-RXN] == * direction: ** REVERSIBLE * common name: ** 1-deoxy-d-xylulose_5...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15676 CPD-15676] == * smiles: ** CCCCCCC=CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXPREDISOM-RXN DXPREDISOM-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15676 CPD-15676] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** CCCCCCC=CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
 
* common name:
 
* common name:
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** 1-deoxy-d-xylulose_5-phosphate_reductoisomerase
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** 6-trans-3-oxo-tridecenoyl-CoA
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/1.1.1.267 EC-1.1.1.267]
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** InChIKey=FDXHXLPCLXEYSU-HMXWSVNBSA-J
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* molecular weight:
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** 971.802   
 
* Synonym(s):
 
* Synonym(s):
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** 6E-3-oxo-tridecenoyl-CoA
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-14788]]
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** 1 [[NADP]][c] '''+''' 1 [[2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 NADP+[c] '''+''' 1 2-C-methyl-D-erythritol 4-phosphate[c] '''<=>''' 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 1-deoxy-D-xylulose 5-phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_15169]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13717 13717]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90657406 90657406]
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* LIGAND-RXN:
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{{#set: smiles=CCCCCCC=CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05688 R05688]
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{{#set: common name=6-trans-3-oxo-tridecenoyl-CoA}}
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{{#set: direction=REVERSIBLE}}
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{{#set: inchi key=InChIKey=FDXHXLPCLXEYSU-HMXWSVNBSA-J}}
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{{#set: common name=1-deoxy-d-xylulose_5-phosphate_reductoisomerase}}
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{{#set: molecular weight=971.802    }}
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{{#set: ec number=EC-1.1.1.267}}
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{{#set: common name=6E-3-oxo-tridecenoyl-CoA}}
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{{#set: gene associated=Tiso_gene_15169}}
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{{#set: consumed by=RXN-14788}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 17:06, 21 March 2018

Metabolite CPD-15676

  • smiles:
    • CCCCCCC=CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
  • common name:
    • 6-trans-3-oxo-tridecenoyl-CoA
  • inchi key:
    • InChIKey=FDXHXLPCLXEYSU-HMXWSVNBSA-J
  • molecular weight:
    • 971.802
  • Synonym(s):
    • 6E-3-oxo-tridecenoyl-CoA

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CCCCCCC=CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-" cannot be used as a page name in this wiki.



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