Difference between revisions of "RXN-17116"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1762 TAX-17...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17116 RXN-17116] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17116 RXN-17116] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1762 TAX-1762]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
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** thiolase
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** acetyl-_c-acetyltransferase
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** 3-ketoacyl-_thiolase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
** arabinogalactan biosynthesis
 
  
== Reaction(s) found ==
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== Reaction Formula ==
'''2''' reactions found over '''17''' reactions in the full pathway
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* With identifiers:
* [[GALPMUT-RXN]]
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** 1 [[CPD-18494]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-17365]][c] '''+''' 1 [[ACETYL-COA]][c]
** 2 associated gene(s):
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* With common name(s):
*** [[Tiso_gene_15395]]
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** 1 3-oxo-(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 (4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
*** [[Tiso_gene_3775]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_3856]]
* [[UDPGLUCEPIM-RXN]]
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** Source: [[annotation-in-silico_annotation]]
** 4 associated gene(s):
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*** Assignment: EC-NUMBER
*** [[Tiso_gene_9823]]
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* Gene: [[Tiso_gene_17451]]
*** [[Tiso_gene_3236]]
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** Source: [[annotation-in-silico_annotation]]
*** [[Tiso_gene_15395]]
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*** Assignment: EC-NUMBER
*** [[Tiso_gene_10797]]
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** Source: [[annotation-experimental_annotation]]
** 5 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_15327]]
*** [[orthology-athaliana]]
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** Source: [[annotation-experimental_annotation]]
*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
*** [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_10116]]
*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
== Reaction(s) not found ==
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*** Assignment: EC-NUMBER
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11070 RXN-11070]
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** Source: [[annotation-experimental_annotation]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11072 RXN-11072]
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*** Assignment: EC-NUMBER
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11075 RXN-11075]
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* Gene: [[Tiso_gene_3855]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11077 RXN-11077]
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** Source: [[annotation-in-silico_annotation]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11078 RXN-11078]
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*** Assignment: EC-NUMBER
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11079 RXN-11079]
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** Source: [[annotation-experimental_annotation]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11080 RXN-11080]
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*** Assignment: EC-NUMBER
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11081 RXN-11081]
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== Pathways  ==
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11082 RXN-11082]
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* [[PWY-7726]], (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11091 RXN-11091]
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** '''5''' reactions found over '''13''' reactions in the full pathway
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11092 RXN-11092]
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== Reconstruction information  ==
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11093 RXN-11093]
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* Category: [[annotation]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11094 RXN-11094]
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** Source: [[annotation-experimental_annotation]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6380 RXN-6380]
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*** Tool: [[pathwaytools]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-1633 RXN1G-1633]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-1762}}
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{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=mycolyl-arabinogalactan-peptidoglycan complex biosynthesis}}
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{{#set: common name=thiolase}}
{{#set: common name=arabinogalactan biosynthesis}}
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{{#set: common name=acetyl-_c-acetyltransferase}}
{{#set: reaction found=2}}
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{{#set: common name=3-ketoacyl-_thiolase}}
{{#set: total reaction=17}}
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{{#set: ec number=EC-2.3.1.16}}
{{#set: completion rate=12.0}}
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{{#set: gene associated=Tiso_gene_3856|Tiso_gene_17451|Tiso_gene_15327|Tiso_gene_10116|Tiso_gene_3855}}
 +
{{#set: in pathway=PWY-7726}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:15, 21 March 2018

Reaction RXN-17116

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thiolase
    • acetyl-_c-acetyltransferase
    • 3-ketoacyl-_thiolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-oxo-(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA[c] + 1 coenzyme A[c] => 1 (4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA[c] + 1 acetyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7726, (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase): PWY-7726
    • 5 reactions found over 13 reactions in the full pathway

Reconstruction information

External links