Difference between revisions of "RXN-2425"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOKIN-RXN GLUCOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glucokinase ** hexoki...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2425 RXN-2425] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/4.2.1...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOKIN-RXN GLUCOKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2425 RXN-2425] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** glucokinase
+
−
** hexokinase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.1 EC-2.7.1.1]
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
−
** [http://enzyme.expasy.org/EC/2.7.1.2 EC-2.7.1.2]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[Glucopyranose]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[D-glucopyranose-6-phosphate]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[3-HYDROXYADIPYL-COA]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[TRANS-23-DEHYDROADIPYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 D-glucopyranose[c] '''=>''' 1 ADP[c] '''+''' 1 D-glucopyranose 6-phosphate[c] '''+''' 1 H+[c]
+
** 1 (3S)-hydroxyadipyl-CoA[c] '''<=>''' 1 H2O[c] '''+''' 1 trans-2,3-dehydroadipyl-coA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_3107]]
+
* Gene: [[Tiso_gene_5857]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
** Source: [[orthology-esiliculosus]]
−
** Source: [[annotation-experimental_annotation]]
+
* Gene: [[Tiso_gene_14257]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_1303]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-synechocystis]]
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1182]], trehalose degradation II (trehalase): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1182 PWY0-1182]
+
* [[PWY-1361]], benzoyl-CoA degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1361 PWY-1361]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
+
* [[PWY0-321]], phenylacetate degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-321 PWY0-321]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
+
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
−
* [[TREDEGLOW-PWY]], trehalose degradation I (low osmolarity): [http://metacyc.org/META/NEW-IMAGE?object=TREDEGLOW-PWY TREDEGLOW-PWY]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-621]], sucrose degradation III (sucrose invertase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-621 PWY-621]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
−
** '''11''' reactions found over '''15''' reactions in the full pathway
+
−
* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514]
+
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
−
* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
+
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-2723]], trehalose degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2723 PWY-2723]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
+
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
−
* [[PWY-2722]], trehalose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2722 PWY-2722]
+
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5661]], GDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-synechocystis]]
+
** Source: [[orthology-athaliana]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17825 17825]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34863 34863]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01786 R01786]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06942 R06942]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00299 R00299]
+
{{#set: direction=REVERSIBLE}}
−
* UNIPROT:
+
{{#set: ec number=EC-4.2.1.17}}
−
** [http://www.uniprot.org/uniprot/P0A6V8 P0A6V8]
+
{{#set: gene associated=Tiso_gene_5857|Tiso_gene_14257}}
−
** [http://www.uniprot.org/uniprot/P21908 P21908]
+
{{#set: in pathway=PWY-1361|PWY0-321}}
−
** [http://www.uniprot.org/uniprot/P64254 P64254]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/Q8XDH5 Q8XDH5]
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/Q8XDH4 Q8XDH4]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/Q9CE25 Q9CE25]
+
−
** [http://www.uniprot.org/uniprot/P52792 P52792]
+
−
** [http://www.uniprot.org/uniprot/Q9V2Z6 Q9V2Z6]
+
−
** [http://www.uniprot.org/uniprot/Q7M537 Q7M537]
+
−
** [http://www.uniprot.org/uniprot/P17709 P17709]
+
−
** [http://www.uniprot.org/uniprot/Q04409 Q04409]
+
−
** [http://www.uniprot.org/uniprot/Q92407 Q92407]
+
−
** [http://www.uniprot.org/uniprot/O31392 O31392]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glucokinase}}
+
−
{{#set: common name=hexokinase}}
+
−
{{#set: ec number=EC-2.7.1.1}}
+
−
{{#set: ec number=EC-2.7.1.2}}
+
−
{{#set: gene associated=Tiso_gene_3107|Tiso_gene_1303}}
+
−
{{#set: in pathway=PWY0-1182|PWY-7238|GLYCOCAT-PWY|TREDEGLOW-PWY|PWY-621|PWY-7385|P124-PWY|PWY-5514|GLUCOSE1PMETAB-PWY|ANAGLYCOLYSIS-PWY|PWY-2723|P122-PWY|PWY-2722|PWY-5661}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:24, 21 March 2018

Reaction RXN-2425

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1361, benzoyl-CoA degradation I (aerobic): PWY-1361
    • 2 reactions found over 7 reactions in the full pathway
  • PWY0-321, phenylacetate degradation I (aerobic): PWY0-321
    • 2 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-2425&oldid=48503"