Difference between revisions of "RXN-7904"

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(Created page with "Category:Gene == Gene Tiso_gene_4788 == * left end position: ** 71 * transcription direction: ** POSITIVE * right end position: ** 2666 * centisome position: ** 0.49657294...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** acyl-_...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_4788 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] ==
−
* left end position:
+
* direction:
−
** 71
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** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
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** polyketide_synthase
−
* right end position:
+
** acyl-_synthetase
−
** 2666
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** long_chain_acyl-_synthetase
−
* centisome position:
+
** ORF
−
** 0.49657294   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[3.2.1.113-RXN]]
+
* With identifiers:
−
** in-silico_annotation
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** 1 [[ATP]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Long-Chain-Acyl-CoAs]][c] '''+''' 1 [[AMP]][c]
−
***ec-number
+
* With common name(s):
−
** [[pantograph]]-[[esiliculosus]]
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** 1 ATP[c] '''+''' 1 a long-chain fatty acid[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 a long-chain acyl-CoA[c] '''+''' 1 AMP[c]
−
== Pathways associated ==
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_348]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7855]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4191]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways ==
 +
* [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=71}}
+
* PIR:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
−
{{#set: right end position=2666}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901]
−
{{#set: centisome position=0.49657294    }}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117]
−
{{#set: reaction associated=3.2.1.113-RXN}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O60135 O60135]
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** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
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** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
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** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
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** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
 +
** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
 +
** [http://www.uniprot.org/uniprot/Q96338 Q96338]
 +
** [http://www.uniprot.org/uniprot/Q96538 Q96538]
 +
** [http://www.uniprot.org/uniprot/Q96537 Q96537]
 +
** [http://www.uniprot.org/uniprot/O15840 O15840]
 +
** [http://www.uniprot.org/uniprot/O81614 O81614]
 +
** [http://www.uniprot.org/uniprot/P73004 P73004]
 +
** [http://www.uniprot.org/uniprot/P47912 P47912]
 +
** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
 +
** [http://www.uniprot.org/uniprot/P69452 P69452]
 +
** [http://www.uniprot.org/uniprot/P69451 P69451]
 +
** [http://www.uniprot.org/uniprot/Q02602 Q02602]
 +
** [http://www.uniprot.org/uniprot/P30624 P30624]
 +
** [http://www.uniprot.org/uniprot/P33124 P33124]
 +
** [http://www.uniprot.org/uniprot/P33121 P33121]
 +
** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
 +
** [http://www.uniprot.org/uniprot/O51539 O51539]
 +
** [http://www.uniprot.org/uniprot/O30039 O30039]
 +
** [http://www.uniprot.org/uniprot/P44446 P44446]
 +
** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
 +
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
 +
** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
 +
** [http://www.uniprot.org/uniprot/P94547 P94547]
 +
** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
 +
** [http://www.uniprot.org/uniprot/O83181 O83181]
 +
** [http://www.uniprot.org/uniprot/Q10776 Q10776]
 +
** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
 +
** [http://www.uniprot.org/uniprot/P39002 P39002]
 +
** [http://www.uniprot.org/uniprot/O51162 O51162]
 +
** [http://www.uniprot.org/uniprot/P39518 P39518]
 +
** [http://www.uniprot.org/uniprot/P18163 P18163]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=polyketide_synthase}}
 +
{{#set: common name=acyl-_synthetase}}
 +
{{#set: common name=long_chain_acyl-_synthetase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.2.1.3}}
 +
{{#set: gene associated=Tiso_gene_348|Tiso_gene_135|Tiso_gene_500|Tiso_gene_7855|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_9394|Tiso_gene_136|Tiso_gene_4191}}
 +
{{#set: in pathway=PWY-6803|PWY-5143|PWY-6873|PWY-7033|PWY-5885}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:54, 21 March 2018

Reaction RXN-7904

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • acyl-_synthetase
    • long_chain_acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6803, phosphatidylcholine acyl editing: PWY-6803
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5143, long-chain fatty acid activation: PWY-5143
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6873, long chain fatty acid ester synthesis (engineered): PWY-6873
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7033, alkane biosynthesis II: PWY-7033
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5885, wax esters biosynthesis II: PWY-5885
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-7904&oldid=44479"