Difference between revisions of "RXN-9524"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_7855 == * left end position: ** 7630 * transcription direction: ** POSITIVE * right end position: ** 8839 * centisome position: ** 46.66952...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9524 RXN-9524] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-octanoyl-[acyl-carrier...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_7855 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9524 RXN-9524] ==
−
* left end position:
+
* direction:
−
** 7630
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** 3-oxo-octanoyl-[acyl-carrier protein] reductase
−
* right end position:
+
** polyketide_synthase
−
** 8839
+
** 3-oxoacyl-(acyl-carrier-protein)
−
* centisome position:
+
* ec number:
−
** 46.66952   
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[ACYLCOASYN-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[3-Oxo-octanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[3-Hydroxy-octanoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
−
***ec-number
+
* With common name(s):
−
* [[LINOLENOYL-RXN]]
+
** 1 a 3-oxo-octanoyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 a (3R)-3-hydroxyoctanoyl-[acp][c] '''+''' 1 NADP+[c]
−
** in-silico_annotation
+
 
−
***ec-number
+
== Genes associated with this reaction  ==
−
* [[R223-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_13083]]
−
***ec-number
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-12184]]
+
*** Assignment: EC-NUMBER
−
** in-silico_annotation
+
** Source: [[annotation-experimental_annotation]]
−
***ec-number
+
*** Assignment: EC-NUMBER
−
* [[RXN-12978]]
+
** Source: [[orthology-synechocystis]]
−
** in-silico_annotation
+
** Source: [[orthology-esiliculosus]]
−
***ec-number
+
* Gene: [[Tiso_gene_500]]
−
* [[RXN-13290]]
+
** Source: [[annotation-in-silico_annotation]]
−
** in-silico_annotation
+
*** Assignment: EC-NUMBER
−
***ec-number
+
* Gene: [[Tiso_gene_136]]
−
* [[RXN-13614]]
+
** Source: [[annotation-in-silico_annotation]]
−
** in-silico_annotation
+
*** Assignment: EC-NUMBER
−
***ec-number
+
* Gene: [[Tiso_gene_9885]]
−
* [[RXN-16380]]
+
** Source: [[annotation-experimental_annotation]]
−
** in-silico_annotation
+
*** Assignment: EC-NUMBER
−
***ec-number
+
* Gene: [[Tiso_gene_624]]
−
* [[RXN-16389]]
+
** Source: [[orthology-synechocystis]]
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_10876]]
−
***ec-number
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-16393]]
+
*** Assignment: EC-NUMBER
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_10415]]
−
***ec-number
+
** Source: [[orthology-synechocystis]]
−
* [[RXN-16401]]
+
* Gene: [[Tiso_gene_16579]]
−
** in-silico_annotation
+
** Source: [[orthology-synechocystis]]
−
***ec-number
+
* Gene: [[Tiso_gene_135]]
−
* [[RXN-16402]]
+
** Source: [[annotation-in-silico_annotation]]
−
** in-silico_annotation
+
*** Assignment: EC-NUMBER
−
***ec-number
+
* Gene: [[Tiso_gene_13394]]
−
* [[RXN-16415]]
+
** Source: [[annotation-in-silico_annotation]]
−
** in-silico_annotation
+
*** Assignment: EC-NUMBER
−
***ec-number
+
== Pathways ==
−
* [[RXN-16418]]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** in-silico_annotation
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
***ec-number
+
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
−
* [[RXN-7904]]
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
** in-silico_annotation
+
== Reconstruction information  ==
−
***ec-number
+
* Category: [[orthology]]
−
* [[RXN-9623]]
+
** Source: [[orthology-synechocystis]]
−
** in-silico_annotation
+
*** Tool: [[pantograph]]
−
***ec-number
+
** Source: [[orthology-esiliculosus]]
−
* [[RXN-9644]]
+
*** Tool: [[pantograph]]
−
** in-silico_annotation
+
* Category: [[manual]]
−
***ec-number
+
** Source: [[manual-primary_network]]
−
* [[RXN-9673]]
+
* Category: [[annotation]]
−
** in-silico_annotation
+
** Source: [[annotation-in-silico_annotation]]
−
***ec-number
+
*** Tool: [[pathwaytools]]
−
* [[RXN0-7238]]
+
** Source: [[annotation-experimental_annotation]]
−
** in-silico_annotation
+
*** Tool: [[pathwaytools]]
−
***ec-number
+
−
* [[RXN0-7239]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN0-7248]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN66-469]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN66-477]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN66-480]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN66-483]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN66-484]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[TRANS-RXN0-623]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
== Pathways associated ==
+
−
* [[PWY-6920]]
+
−
* [[P221-PWY]]
+
−
* [[PWY-321]]
+
−
* [[PWY-5972]]
+
−
* [[PWY-5971]]
+
−
* [[PWY-7033]]
+
−
* [[PWY-5136]]
+
−
* [[PWY66-389]]
+
−
* [[PWY-7288]]
+
−
* [[PWY-6733]]
+
−
* [[PWY-7094]]
+
−
* [[PWY66-391]]
+
−
* [[FAO-PWY]]
+
−
* [[PWY-1121]]
+
−
* [[PWY-6873]]
+
−
* [[PWY-5147]]
+
−
* [[PWY-5143]]
+
−
* [[PWY-5885]]
+
−
* [[PWY-7724]]
+
−
* [[PWY-6001]]
+
−
* [[PWY-6000]]
+
−
* [[PWY-7049]]
+
−
* [[PWY66-387]]
+
−
* [[PWY-5989]]
+
−
* [[PWY-6803]]
+
−
* [[PWY66-388]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=7630}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=POSITIVE}}
+
{{#set: common name=3-oxo-octanoyl-[acyl-carrier protein] reductase}}
−
{{#set: right end position=8839}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: centisome position=46.66952    }}
+
{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
−
{{#set: reaction associated=ACYLCOASYN-RXN|LINOLENOYL-RXN|R223-RXN|RXN-12184|RXN-12978|RXN-13290|RXN-13614|RXN-16380|RXN-16389|RXN-16393|RXN-16401|RXN-16402|RXN-16415|RXN-16418|RXN-7904|RXN-9623|RXN-9644|RXN-9673|RXN0-7238|RXN0-7239|RXN0-7248|RXN66-469|RXN66-477|RXN66-480|RXN66-483|RXN66-484|TRANS-RXN0-623}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: pathway associated=PWY-6920|P221-PWY|PWY-321|PWY-5972|PWY-5971|PWY-7033|PWY-5136|PWY66-389|PWY-7288|PWY-6733|PWY-7094|PWY66-391|FAO-PWY|PWY-1121|PWY-6873|PWY-5147|PWY-5143|PWY-5885|PWY-7724|PWY-6001|PWY-6000|PWY-7049|PWY66-387|PWY-5989|PWY-6803|PWY66-388}}
+
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-1.1.1.100}}
 +
{{#set: gene associated=Tiso_gene_13083|Tiso_gene_500|Tiso_gene_136|Tiso_gene_9885|Tiso_gene_624|Tiso_gene_10876|Tiso_gene_10415|Tiso_gene_16579|Tiso_gene_135|Tiso_gene_13394}}
 +
{{#set: in pathway=PWY-5971|PWY-5994}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:17, 21 March 2018

Reaction RXN-9524

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxo-octanoyl-[acyl-carrier protein] reductase
    • polyketide_synthase
    • 3-oxoacyl-(acyl-carrier-protein)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

"3-oxo-octanoyl-[acyl-carrier protein] reductase" cannot be used as a page name in this wiki.






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9524&oldid=47569"